Hi Michael, On Thu, May 21, 2015 at 10:44:56PM +0000, Michael Crusoe wrote: > Jeff ([email protected]) recently emailed about the status of the packages of > the Trinity RNASeq assembler and I thought I'd update the group while I was > at it. > > trinityrnaseq package: waiting on libjung-java, rsem, express, > transdecoder, and jaligner. Otherwise all the tests run successfully for me.
I'd love to provide good news about new queue processing but I have no idea why it is currently that slow. :-( > libjung-java package: need to split into two source package: one free and > one contrib. If I read this correctly you see a chance that we can depend from the free part? > This has the pleasant side effect of making the patches that > migrate the code off of the obsolete collections15 framework much clearer. > Will also test out newly free'd libcolt-free package > https://lists.debian.org/debian-med/2015/03/msg00150.html +1 > rsem: waiting for r-bioc-ebseq; needs manpages > > r-bioc-ebseq: waiting for r-cran-blockmodeling > > r-cran-blockmodeling: in NEW queue > https://ftp-master.debian.org/new/r-cran-blockmodeling_0.1.8-1.html We could try pinging ftpmaster ranking those packages that are at the end of a chain of dependency higher in their priority list. > express: In NEW queue https://ftp-master.debian.org/new/express_1.5.1-1.html > could benefit from having binary installed to another location and > symlinked to /usr/bin/express > > transdecoder: in NEW queue > https://ftp-master.debian.org/new/transdecoder_2.0.1+dfsg-1.html > > jaligner: in NEW queue: > https://ftp-master.debian.org/new/jaligner_1.0-1.html Thanks a lot for this overview Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: https://lists.debian.org/[email protected]
