Hi Jenya, thanks a lot for your super fast reply.
On Wed, Aug 05, 2015 at 07:44:41AM -0600, Jenya Kopylov wrote: > Hi Andreas, > > I've uploaded the user manual 2.0 in tex format (see here > <https://github.com/biocore/sortmerna>). This is sufficient for the moment. Please make sure it will be included into the downloadable tarball of your next release. > Also, thank you for the man pages! I'll take a more thorough look later > today. Fine. I hope I did the formating sensibly enough. > This month I plan to do a lot of updates to the overall code, so > it's a good time to incorporate these. :-) > Let me know if you have other questions regarding the installation with > QIIME. May be I'll come up with more questions. We are currently working on some remaining dependencies (sumatra and python-burrito-fillings). > On Wed, Aug 5, 2015 at 7:23 AM, Jenya Kopylov <[email protected]> > wrote: > > > Thank you for reporting these issues, > > > > I will add the .tex file for the user manual 2.0 to github (SortMeRNA > > development <https://github.com/biocore/sortmerna>). > > > > The latest QIIME release (1.9.1 > > <https://github.com/biocore/qiime/releases>) requires scikit-bio >= > > 0.2.3, < 0.3.0 and SortMeRNA 2.0 (many of QIIME's scripts for 1.9.1 import > > parse_fasta). Ahhh, that's a pretty important hint. We might step back the Debian version in this case most probably. > > I can update the SortMeRNA tests to work with the latest > > release of scikit-bio on the SortMeRNA development version, however they > > will remain incompatible with QIIME 1.9.1 (and the development version) > > since several other minor changes have been made (mainly the --blast > > option) that will require additional changes in QIIME's tests. > > > > Greg, perhaps you can comment more on the scikit-bio release? > > > > Jenya Thanks again for your very fast response Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: https://lists.debian.org/[email protected]
