Hi Andreas, I'm delighted to hear that! Thanks for all the comments too, here are my short answers:
0. sure I will change the approach 1. The intended license is GPL v3. If there is no explicite statement I will add it as part of point 2. 2. I will put some effort in the next couple of days and will try to fix the build quickly both on Python 2 and 3. 3. I will investigate the possible approaches and will do it better 4. I will investigate this as part of point point 2. I estimate this will take me about a week or two is that fine? Best wishes, Michal 2015-11-21 18:53 GMT+01:00 Andreas Tille <[email protected]>: > Hello, > > I'm writing you on behalf of the Debian Med team that has the objective > to package all free software that is relevant in Biology and Medicine > for official Debian. > > I came across GWAMAR[1] and started the packaging in Debian Git[2]. > When doing so I stumbled upons some issues in the download archive[3]: > > 0. Just a comment: It would be more convenient to find versioned > download archives rather than versioned directories. The > rationale behind this is that you have files with the same name > but different content. > > 1. I did not found any explicite license statement neither at the > website nor inside the code. Could you be so kind to clarify > this? > > 2. At Bitbucket[4] you write: > This software is written in Python, thus Python 2 or 3 is > required to run GWAMAR. > When trying to build with Python3 I've git some errors > (basically in print statements with Python2 syntax. Please > let me know if you are interested in patches fixing this. > > 3. I noticed that the default config file in the download archive > contains several private PATH settings. I patched these to > the Debian locations in the packaging git[5]. It would be > great if you could change the default config file to a more > neutral setting. > > 4. Finally I endet up by an error message > > File "a1_save_details_scores_all.py", line 161, in <module> > input_fh = open(input_fn) > IOError: [Errno 2] No such file or directory: > 'datasets/mtu173/exP//res_profiles.txt' > > I have no idea how to deal with this since this file is > neither in the download tarball nor can I see it in the > repository at Bitbucket. > > I hope you like the intend to package GWAMAR for Debian and can > help with these issues. > > Kind regards > > Andreas. > > [1] http://bioputer.mimuw.edu.pl/gwamar/ > [2] git://anonscm.debian.org/debian-med/gwamar.git > [3] http://bioputer.mimuw.edu.pl/gwamar/software/gwamar_v1.14/gwamar.zip > [4] https://bitbucket.org/mimowo/gwamar > [5] > https://anonscm.debian.org/cgit/debian-med/gwamar.git/tree/debian/patches/adapt_debian_locations_of_binaries.patch > > -- > http://fam-tille.de
