Many thanks for the clarification. Are there plans to include a test suite so that we can easily detect compatibility issues? I admit that the src/ subdirectories of wgs-assembler are cryptically named, so it's possible I missed it if it exists.
Regarding pbutgcns, I will likely just exclude it. There is no licensing information in the source distribution that I could find and the author(s) have not responded to my license clarification request [1]. Furthermore, in my own research, I found that using it produced suboptimal assemblies as compared to wgs-assembler's native module. Many thanks and regards Afif 1. https://github.com/pbjd/pbutgcns/issues/1 -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name على الأربعاء 16 كانون الأول 2015 06:31، كتب Serge Koren: > Hello, > > The falcon_sense binary is a PyInstaller binary built from the > falcon_sense.py script to ease distribution for users so they don’t have > to build/checkout all of Falcon’s codebase. If you build Falcon version > 0.1.3, it should be compatible with PBcR. You would need to strip the > .py of the file end and make sure it is executable so the PBcR pipeline > will be able to run it as falcon_sense (without the .py and without > specifying python). As long as it is in your path, it will be picked up > by PBcR. As for pbutgcns, it is not required but does speed up the > overall pipeline, you should also be able to build it from source: > https://github.com/pbjd/pbutgcns > as well. > > Sergey >
