Hi Andreas, I have just released a new revision. There was no dependency on Netbeans library in jModelTest (that was in ProtTest, instead). The new version allows for using the PhyML binary located at /usr/bin/phyml. The changes are listed here:
https://github.com/ddarriba/jmodeltest2/blob/master/src/main/resources/CHANGELOG Please let me know if there is anything else missing. Thank you, Diego. On 14.01.2016 08:32, Andreas Tille wrote: > Hi Diego, > > I think I forgot to CC you in my last mail. I wonder what the status of > jmodeltest might be. Any estimation when we can expect a new version > without netbeans dependencies? > > Kind regards > > Andreas. > > On Thu, Oct 29, 2015 at 09:54:26AM +0100, Andreas Tille wrote: >> Hi Diego, >> >> On Mon, Oct 26, 2015 at 07:10:38PM +0100, Diego Darriba wrote: >>> I added a new tagged revision after removing the dependency on ReadSeq. >> >> I checked this out and noticed that the BrowserLauncher is now the only >> thing left for packaging to fullfill all prerequisites for jmodeltest. >> I guess it is this project: >> >> http://browserlaunch2.sourceforge.net/ >> >> right? >> >> BTW, I noticed that the build process is a bit picky about non-ASCII >> characters. As I said I have no detailed experience with Java source >> code but I needed to apply this patch >> >> >> https://anonscm.debian.org/cgit/debian-med/jmodeltest.git/tree/debian/patches/encoding.patch >> >> to enable building the source code. I agree that it is not really nice >> to mix up proper Spanish names but lacking a better solution I went >> for this one for the moment. >> >> Kind regards >> >> Andreas. >> >> -- >> http://fam-tille.de >> >> >
