Hi Jihyeok, On Tue, Mar 15, 2016 at 01:13:53AM +0900, Jihyeok Seo wrote: > > Thought I’d introduce myself to the list by forwarding this email. Thank you > for the kind instructions, Andreas!
Thankls for your interest in Debian Med and showing up here. > I’m a huge fan of testing and verifying software correctness, so I’m very > excited about working on the Debian Med CI project, regardless of GSoC. That's fine for sure. I think we can need any helping hand to increase testing. > I signed up on Alioth as limeburst(-guest?), Added to Debian Med project which grants you commit permission. > and I’m open to suggestions as to which packages I should start contributing > to. Feel free to pick one yourself. Anna intended to start with bwa so we should not touch this in the moment. You might like to check prodigal where I have given hints here: https://lists.debian.org/debian-med/2016/02/msg00123.html May be it makes sense to create a Wiki page https://wiki.debian.org/DebianMed/CI (or what better name you might invent) where Anna and you specify their near time targets and tick-mark if the target is done. Kind regards Andreas. > Regards, > Jihyeok > > > On Mar 9, 2016, at 12:38 AM, Andreas Tille <[email protected]> wrote: > > > > Hi Jihyeok, > > > > thanks for your interest in the CI project. > > > > On Tue, Mar 08, 2016 at 03:53:12PM +0900, Jihyeok Seo wrote: > >> My name is Jihyeok Seo, and I am a student studying biology and computer > >> science at Konkuk University. > > > > The combination of biology and computer science is exactly the > > qualification that is needed for the project. > > > >> I’ve been thinking about writing a proposal for this year’s Google Summer > >> of Code, and the CI project[1] listed on the Debian GSoC wiki caught my > >> interest. I’m curious whether there are small tasks related to this > >> project I can work on before writing my proposal. > > > > If you read this thread on the Debian Med mailing list > > > > https://lists.debian.org/debian-med/2016/02/msg00116.html > > > > you should get some idea about small tasks. Please also read the Debian > > Med policy[4] to learn about the technique used in the team. The first > > parts of the thread above should help you getting an alioth login. > > > > Once you are able to login there please show up on the mailing list and > > we can coordinate tasks there. > > > >> I don’t have much programming experience, but I’ll leave a link to my > >> GitHub profile[2]. I have worked with PDB(Protein Data Bank) files, > >> validating and correcting errors. I also wrote some test cases for a FASTA > >> parser in my advisor’s lab. I have some experience writing tests and CI > >> from when I was contributing to the Earth Reader[3] project, and others. > > > > I think some basic shell scripting is sufficient for the job - the more > > important thing is that you know the biologic applications and you are > > able to evaluate the results. > > > >> I have subscribed to the debian-med mailing list, and now going through > >> the Med wiki. You can contact me by this email address, or I’m limeburst > >> on OFTC. Thank you for your guidance! > > > > Nice to know that you are subscribed. If needed we could also meet on > > IRC but in general I prefer public discussion on the list. So even feel > > free to quote me in public there when responding to this mail. > > > > Kind regards > > > > Andreas. > > > >> Jihyeok > >> > >> [1]: > >> https://wiki.debian.org/SummerOfCode2016/Projects#SummerOfCode2016.2FProjects.2FBioToolsTesting.Continuous_Integration_for_all_biological_applications_inside_Debian > >> [2]: https://github.com/limeburst > >> [3]: http://earthreader.org > > > > [4] http://debian-med.alioth.debian.org/docs/policy.html > > > > -- > > http://fam-tille.de > > > > > > > > -- http://fam-tille.de
