Hi again,
I have to give you a little update i'm reading policy, join alioth page and
have no problem in that subject but i have a problem on packaging
PhyloPythiaS
program.
Program have no source code in its github repository, in article they said
it's an GPL 3 licensed program but in license file they mentioned it is
not a free software with another license in attachment and i confused about
it . Can you suggest me another package i can work on it. Thanks for your
help.
Regards
2016-03-22 15:14 GMT+02:00 Andreas Tille <[email protected]>:
> Hi Canberk,
>
> On Tue, Mar 22, 2016 at 02:59:50PM +0200, Canberk Koç wrote:
> > My name is Canberk i am 3. grade computer engineering student from
> > Çanakkale Onsekiz Mart University/Türkiye.
> > I interested in your project in GSOC.
>
> Thanks for your introduction and your interest in the Debian Med project
> and its GSoC.
>
> > Nowadays i am working on a bionformatic project which may help Anvio
> Project
> > <http://merenlab.org/projects/anvio/index.html> program and studying on
> > making debian packages . I'm familiar with some bionformatic tools like
> > PhyloPythiaS <https://peerj.com/articles/1603/> but also a newbie in
> this
> > subject and open source community.
> > I want to ask you what should i do and where to start to work with you
> and
> > help you in this project.
>
> >From my perspective the best way to start would be to package
> PhyloPythiaS since you are familiar with it and also add a test suite
> to it. The main rules how to create Debian packages in the Debian
> Med team are explained in our team policy[1]. I hope you might have
> realised the Mentoring of the Month[2] effort which is discussed here
> on the list currently in connection with the GSoC project.
>
> This should provide you with all technical skills you need to cope
> with the GsoC project.
>
> > Already forgive my silly questions thanks to all :)
>
> I do not remember any silly question here on this list and yours is
> perfectly fine. ;-)
>
> Feel free to keep on asking if this information was not helpful enough
> to bring you on track.
>
> Kind regards
>
> Andreas.
>
>
> [1] http://debian-med.alioth.debian.org/docs/policy.html
> [2] https://wiki.debian.org/DebianMed/MoM
>
> --
> http://fam-tille.de
>
>
--
[image: --]
Canberk Koç
[image: https://]about.me/canberkkoc
<https://about.me/canberkkoc?promo=email_sig&utm_source=email_sig&utm_medium=email_sig&utm_campaign=external_links>
PhyloPythiaS End-User License Agreement
---------------------------------------------------
This is a legal agreement ("Agreement") between you ("Licensee", either an
individual or a single entity) and
Max Planck Institute for Informatics
Campus E1.4
66123 Saarbruecken
Germany,
("MPII" for short) about using the PhyloPythiaS software ("Software") that
provides tools for DNA sequence classification.
Please read the following Agreement carefully.
PhyloPythiaS is not open source and the program remains property of the MPII.
The software must not be further distributed without prior permission of the
MPII. If you use the Software in your scientific work, please cite as
[reference]. We would also appreciate it if you send (a link to) your papers,
so that we can learn about your research.
By clicking on "I accept the License Agreement" or by downloading or installing
the software you indicate that you have read and accepted the provisions of the
Agreement and that you agree to be bound by all terms and conditions set forth
herein. If you do not agree to any of the terms of this Agreement, do not
submit a request for the Software and destroy any copies of the Software in
your possession immediately.
1. Copyright
PhyloPythiaS, including but not limited to the program code, sample programs,
any associated files and documentations (the "Software"), is owned by MPII and
is protected by copyright laws. The copyright does not apply to the binary
files (in the bin directory) and the Ruby libraries (in the lib/rubygems
directory). The copyright for these files are owned by the corresponding
authors.
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The Software is licensed free of charge to non-profit organizations for use in
non-profit projects. Any commercial use of the software, including modified
versions not developed in collaboration with MPII, is strictly forbidden
(please contact MPII for a commercial license). Any copies of the Software
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The Software is licensed to the Licensee on an "AS IS" basis without warranty
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Licensee acknowledges that Software furnished hereunder is under test and may
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The Licensee is solely responsible for determining the suitability of the
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No distribution is to be made of the Software, or of modified versions of the
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The Software is obtained via Internet and/or E-Mail.
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MPII is committed to respecting the privacy and data security of the users of
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However, due to the software being in test state it may happen that private
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If the Licensee fails to comply with any term of this Agreement, this Agreement
is terminated and the Licensee has no further right to use the Software. On
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The Software and any copies shall be destroyed.
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This Agreement is made and shall be construed in accordance with the laws of
Germany. Court of Jurisdiction is Saarbruecken, Germany.
10. Construction Clause
If for any reason a court of competent jurisdiction finds any provision of this
Agreement, or portion thereof, to be unenforceable, that provision of the
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If you publish results obtained using the software, then we require that you
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This Agreement constitutes the entire agreement between the Licensee and MPII.
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All modifications or extensions of this Agreement need to be put down in
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