Hellom على الثلاثاء 28 حزيران 2016 04:51، كتب Nate Coraor: > On Tuesday, June 28, 2016, Afif Elghraoui <[email protected] > <mailto:[email protected]>> wrote: > على الإثنين 27 حزيران 2016 12:04، كتب Michael Crusoe: > > Python packages that need packaging: > > > > bx-python > [...] > > I had started some packaging work on bx-python as a dependency for > pbtranscript, but that seems not to be a dependency anymore, so I didn't > pursue it. In any case, bx-python development looks to me to have > stopped. I didn't find upstream very responsive either [1] (based on a > communication attempt and lack of activity on bitbucket). I started some > packaging, but it will need some hacking to work. I can push what I have > if anyone is interested in it. > > > bx-python development moved to Github, you should see more action there: > > https://github.com/bxlab/bx-python >
Ah, thanks; I totally missed that. > It should be straightforward to package. In case the documentation > doesn't say so, numpy is a build dependency. > The problem I had was that the bitbucket version didn't seem to be up-to-date with PyPI while the PyPI tarball didn't include the Cython pyx/pyd sources. This shouldn't be an issue anymore with an up-to-date repository. > > They also use a custom fork of pysam > > What's the plan for this? Integrate the patches upstream or packaging > the fork? > > > They should be upstreamed, but I don't know when this will happen. > Cool. I'm currently looking after the pysam Debian package and might be able to help with that integration. Many thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name
