> On Jul 11, 2016, at 8:13 AM, Charles Plessy <[email protected]> wrote: > > Le Thu, Jul 07, 2016 at 10:20:18AM -0400, Michael Crusoe a écrit : >> >> If someone would like to try updating the Debian package with the release >> candidate and testing it that would be useful: >> >> https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-1.007000_003.tar.gz > > Hi Michael and everybody, > > I tested the packaging of /BioPerl-1.007000_004.tar.gz, and it went fine. > Some > regression tests could not be run as not all the optional modules and software > were installed on my laptop. > > Our automated test did not report anything significant. Here is a copy of the > typos it found. > > I: bioperl: spelling-error-in-manpage usr/share/man/man1/bp_biogetseq.1p.gz > retrives retrieves > I: bioperl: spelling-error-in-manpage > usr/share/man/man1/bp_extract_feature_seq.1p.gz specifed specified > I: bioperl: spelling-error-in-manpage usr/share/man/man1/bp_hivq.1p.gz > retreive retrieve > I: bioperl: spelling-error-in-manpage ... use --no-tag-display-limit to see > all (or pipe to a file/program) > W: bioperl: manpage-has-bad-whatis-entry > usr/share/man/man1/bp_netinstall.1p.gz > W: bioperl: manpage-has-bad-whatis-entry > usr/share/man/man1/bp_search2gff.1p.gz > W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_seqcut.1p.gz > I: libbio-perl-perl: spelling-error-in-manpage > usr/share/man/man3/Bio::Align::AlignI.3pm.gz wont won't > I: libbio-perl-perl: spelling-error-in-manpage > usr/share/man/man3/Bio::AnalysisI.3pm.gz refrence reference > I: libbio-perl-perl: spelling-error-in-manpage > usr/share/man/man3/Bio::AnalysisI.3pm.gz folowing following > I: libbio-perl-perl: spelling-error-in-manpage ... use --no-tag-display-limit > to see all (or pipe to a file/program) > W: libbio-perl-perl: manpage-has-bad-whatis-entry > usr/share/man/man3/Bio::Index::Stockholm.3pm.gz > W: libbio-perl-perl: manpage-has-bad-whatis-entry > usr/share/man/man3/Bio::OntologyIO::Handlers::BaseSAXHandler.3pm.gz > W: libbio-perl-perl: manpage-has-bad-whatis-entry > usr/share/man/man3/Bio::OntologyIO::obo.3pm.gz > W: libbio-perl-perl: manpage-has-bad-whatis-entry ... use > --no-tag-display-limit to see all (or pipe to a file/program) > W: libbio-perl-perl: manpage-has-errors-from-man > usr/share/man/man3/Bio::SeqIO::bsml.3pm.gz 361: warning [p 4, 0.2i]: can't > break line > > Have a nice day, > > Charles > > -- > Charles Plessy > Debian Med packaging team, > http://www.debian.org/devel/debian-med > Tsurumi, Kanagawa, Japan
Thanks Charles! I’ll link to this as a bug report for doc fixes. chris
