Hi Andreas,
OK, I just wanted to write you about it:)
I also made small fix in proftmb and metastudent - turned on allow-stderr
restriction (both packaged failed in Debian CI server because of
pp-popularity-contest warning message output to stderr), they also worth
uploading.
You should also upload profbval (I've made changes after last upload, but
mention them in changelog in wrong place - now this is fixed).
I'll fix spelling warnings in libgo perl then.
BTW, can you remember any details regarding this problem with profphd
(citation from upstream's ChangeLog file):
"
profphd (1.0.42) unstable; urgency=low
* Make prof work with Debian Jessie by requiring perlbrew package
and have it install independent perl v5.10 instance. $[ has been
moved from perl core >=5.16.0 into arybase, and does not produce
the same side effects as in previous perl versions, therefore
breaking prof when run using perl v5.20 in Jessie.
-- Timothy Karl (Aerialis) <[email protected]> Thu, 23 Jul 2015 16:44:30
+0200
"
What exactly side effect does he mean? And what erratic behaviour? If you
don't know, I'll check RostLab's bugs page, write to upstream contacts (via
all possible ways, since it doesn't look like they answer emails fast) and
try to fix.
For now it seems unclear from arybase description (
http://search.cpan.org/dist/perl-5.17.1/ext/arybase/arybase.pm#HISTORY),
what exact "side effect" they use. I tried to update package's supported
perl version on PC (since I haven't figure out yet how to make autopkgtest
use perlbrew correctly), and it seemed to work - when I run predictprotein
with that patched version installed, I had no warning messages or errors,
yay! But probably no errors were shown because I used small portion of
BLASTP database, and some code portions were not used... Any details on
that issue will help :)
2016-07-17 10:41 GMT+03:00 Andreas Tille <[email protected]>:
> Hi Tanya,
>
> I considered your change in libtfbs-perl as worth uploading and I think
> libgo-perl should also be uploaded. What do you think?
>
> Kind regards
>
> Andreas.
>
> --
> http://fam-tille.de
>
--
Best wishes,
Tanya.
