Hello Andreas,Sascha, Thanks for your help first of all. I can't look what you've changed in mummer but i'll look it by tommorrow and i will give you more detailed report. I am going on list also ;-)
Best Regards Canberk Koç [image: https://]about.me/canberkkoc <https://about.me/canberkkoc?promo=email_sig&utm_source=email_sig&utm_medium=email_sig&utm_campaign=external_links> 2016-07-25 10:07 GMT+03:00 Andreas Tille <[email protected]>: > Hi Canberk, > > On Sun, Jul 24, 2016 at 08:13:16AM +0200, Andreas Tille wrote: > > > I commit Gdpc to Git here is the problem unit test codes(all of em) > from > > > Readme file and gives segmentation fault for this issue. > > > > I think this is a severe bug in the package. Would you please use > > > > reportbug > > > > to report the issue. Do you feel able to track down the issue? May be > > some debugging of the source code will shade some light. > > I think this is solved by Sascha's patch and I uploaded the package > without an actual autopkgtest but leaving your script for manual testing > for the users. > > > > Second issue Mummer features mummerplot and run-mummer1 has some faults > > > mummerplots have a lot of faulty lines i can't manage to solve them > > > run-mummer1 also have some problem about tail command neither i can't > > > manage to solve it. But i command line these tests and take pass > result. > > > > Hmmmm, I fixed the line that is uncompressing the data files and now the > > test script seems to pass. What exactly do you think is wrong? > > Could you please explain what exactly is wrong with the mummer test > after I fixed the compression of the test data? I'd recommend to always > use the `find ...` command since it safely unpacks all gzipped files. > > > gdpc > > Uploaded. > > > mummer (I'll convert this to Git as well) > > Please explain more verbosely what might be wrong. > > Further todo suggestions: > > fastqc > kalign > > > I'll convert kalign to Git. > > Done > > probcons > > Kind regards > > Andreas. > > > -- > http://fam-tille.de > >
