Hi, just to let you know: I have moved pymol to
https://anonscm.debian.org/git/debichem/packages/pymol.git and I can care for stripping jquery.js later today. Kind regards Andreas. On Thu, Jul 28, 2016 at 09:54:15AM +0200, Andreas Tille wrote: > Hi once again, > > it seems the upstream source needs to be repackaged due to the > compressed copy of jquery (modules/web/examples/sample13/jquery.js). > The fact that a source tarball needs to be repackaged is IMHO a good > reason for moving the packaging to Git to make sure that all developers > are working on a md5sum identical orig.tar.xz. I'd volunteer to do > the migration if nobody insists. > > Kind regards > > Andreas. > > On Wed, Jul 27, 2016 at 10:42:05PM +0200, Andreas Tille wrote: > > Hi again, > > > > I commited two changes to SVN (fix changelog, remove strange file > > monkeypatch_distutils.pyc no idea how to do this better). When trying > > to build in pbuilder this (expectedly) failed due to the pinning to a > > certain libpng12-0 version which does not exist in debian unstable. I > > stumbled upon this after sending my previous mail and now I'm wondering > > what might have been your motivation for this. > > > > Kind regards > > > > Andreas. > > > > On Wed, Jul 27, 2016 at 09:57:29PM +0200, Andreas Tille wrote: > > > Hi Tanya, > > > > > > I noticed you have created changelog entries for 1.8.2.1 so you seem to > > > have managed to update the patches and build the new version, right? > > > > > > Could you please merge both entries for 1.8.2.1-1 (UNRELEASED) and > > > 1.8.2.1-2? > > > > > > On Wed, Jul 27, 2016 at 07:44:51PM +0300, merlettaia wrote: > > > > Hi Andreas, > > > > > > > > For now I wrote simple test which runs over all .py and .pml scripts > > > > inside > > > > specific directory and tries to run them with pymol with -c flag (for > > > > now > > > > this script doesn't care if python errors appear during run - it only > > > > checks that pymol closes as expected). This is made because some of > > > > these > > > > scripts (located in `data` and `examples` directories in upstream source > > > > tree) use data from other directories in relative paths and write to the > > > > folder where they are located in. I symlink them to temporary > > > > directory. I > > > > haven't solved usage of files from relative paths yet, that's why this > > > > leads to python exceptions, but pymol still closes as expected. > > > > Incorrect paths are present in installed example scripts, for example, > > > > in > > > > /usr/share/doc/pymol/examples/generate_amber.py there is a line: > > > > > > > > model= io.pdb.fromFile("../../test/dat/pept.pdb") > > > > > > > > Since in installation this path is incorrect, this script also raises > > > > python exception (but pymol command line closes as expected). > > > > > > I admit I'm not fully sure if I understand all this but for me this > > > sounds like another quilt patch would be needed to fix the pathes. > > > > > > > I don't know > > > > how to deal with these relative files. I can fix as many examples as I > > > > could to make them find input parameters correctly when they are > > > > installed, > > > > or write several examples by myself. What is a better solution? > > > > > > Hard to say. May be users might know some of these examples from > > > anywhere else than Debian and want to run these. Moreover if you manage > > > to fix these examples this could be forwarded upstream which is in the > > > interest of all users. > > > > > > > I've updated patches 22 and 31 and fixed several lintian warnings. > > > > > > Very nice! > > > > > > > Is this bug in the same state as it was? > > > > https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=506202 - I can fix it > > > > too, if no one fixed it yet. > > > > > > Cool, I filed a bug 8 years ago. I do not even remember. :-) If there > > > is nothing in the bug log and neither in the packaging it is probably > > > not fixed. I would not really call it a show stoper for an upload but > > > if you would fix this it would be nice. > > > > > > > For now I'll add a testsuite for apbs (it will be very simple, but > > > > probably > > > > it would help make it work with pdb2pqr). > > > > > > Very good job so far. > > > > > > Thanks a lot for your work on this > > > > > > Andreas. > > > > > > -- > > > http://fam-tille.de > > > > > > > > > > -- > > http://fam-tille.de > > > > > > -- > http://fam-tille.de > > _______________________________________________ > Debichem-devel mailing list > [email protected] > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debichem-devel > -- http://fam-tille.de
