Hi Andreas, sorry for the delay in replying. I did get your last two emails but it seems the fist one (On Mon, Jul 25, 2016 at 09:45:57PM) never arrived.
Thanks so much for the suggestions. Tin, can you take a look at these two sets of suggestions and update the source code of MetaPhlAn2 accordingly? some small fixes: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/metaphlan2/trunk/debian/patches/fix_sequence.patch?view=markup some spelling issues https://anonscm.debian.org/viewvc/debian-med/trunk/packages/metaphlan2/trunk/debian/patches/spelling.patch?view=markup Tin can also provide more info about the binary data in db_v20. The files ending with "bt2" are created using a script in the Bowtie2 package (bowtie2-build) using a sequence file Tin can provide (it can also be recovered from the bt2 files with bowtie2-inspect if I remember well). For the mpa_v20_m200.pkl Tin can also provide the uncompressed python object (or he can provide a couple of lines of code to uncompress it?) For the LEfSe package I just added the license in the bitbucket repository. For the description, I think you can use the following page: https://bitbucket.org/biobakery/biobakery/wiki/lefse Does it sound like an appropriate description for the package? Let me know if you have other questions or if I missed answering to other emails. thanks so much for your work! Nicola On Sat, Jul 30, 2016 at 10:47 PM Andreas Tille <[email protected]> wrote: > Hi Nicola, > > did you received the two mails about licensing (+ in the case of lefse > a description) ? > > Kind regards > > Andreas. > > On Wed, Jul 27, 2016 at 09:09:01AM +0200, Andreas Tille wrote: > > Hi again, > > > > I have another question in addition to the one below. I was packaging > > MetaPhLan2 to make use of it in my final target package for metaBIT[1] > > which in addition is using some Python code I've found here > > > > https://bitbucket.org/nsegata/lefse > > > > This code has neither any description I could use for the package nor a > > license. It would be really great if you could provide a basic > > description and for packaging a free license would be needed. > > > > Kind regards > > > > Andreas. > > > > On Mon, Jul 25, 2016 at 09:45:57PM +0200, Andreas Tille wrote: > > > Hi Nicola, > > > > > > we just had some conversation about pyphlan. I now want to package > > > MetaPhLan2 for Debian and I have prepared the needed packaging stuff. > > > I did some small fixes > > > > > > > https://anonscm.debian.org/viewvc/debian-med/trunk/packages/metaphlan2/trunk/debian/patches/fix_sequence.patch?view=markup > > > > > > and fixed some spelling issues > > > > > > > https://anonscm.debian.org/viewvc/debian-med/trunk/packages/metaphlan2/trunk/debian/patches/spelling.patch?view=markup > > > > > > you might possibly want to take over in your upstream source. > > > > > > For the final upload to Debian I would need some information how the > > > binary data files in db_v20 were created. Debian requires somehow > > > editable source for each file. This is probably not possible for the > > > files in question but we need to provide some information where the > > > files are obtained from. > > > > > > Kind regards > > > > > > Andreas. > > > > [1] https://bitbucket.org/Glouvel/metabit/wiki/ > > > > -- > > http://fam-tille.de > > -- > http://fam-tille.de >
