My understanding from talking with the TESS team is that these are abstract workflows and not meant to be directly executable, so no competition for CWL :-)
One could imagine a model "finished" workflow created in CWL as a reference. Pe 21 aug. 2016 10:50, <[email protected]> a scris: > Hey Steffen > > The plan* is indeed to annotate such "training workflows" (steps within > them, and the overall thing) with EDAM, and thus > provide a way to link to bio.tools from the diagrams, via the API (i.e. > tool for this step in the workflow). It could > provide a nice visual way to navigate content (tools and training > resources) in both bio.tools and TeSS. The plan is also > to link to Debian packages from bio.tools. And of course, if someone has > made a workflow definition in CWL and the > corresponding workflow is available for download / use in some image / > container / whatever, then that can be registered in > bio.tools with links to download the image, CWL file etc. > > * the problem is finding time / resources to do things :-/ But in any > case, let's keep talking and working to push > ELIXIR:Debian:EDAM links. as per prev. thread a publication could be a > good motivator for pushing work out! > > Cheers > > Jon > > > > https://tess.elixir-uk.org/workflows/structural-bioinformatics-workflow > > > > I like it. And I very much hope this gets interlinked nicely with > > bio.tools so the resources of Debian Med are also found that way. It is > > all a bit high-level/non-existing yet to name the effort a competition > > to what the CWL is about. But the CWL workflows should be somehow > > pointed to from there. In my mind I see something like the KEGG database > > which has networks of interacting genes and species "implement" > > different parts of the reference network. One could have something like > > that with workflows, too. > > > > That "tess" site as a whole is about collecting resources for training. > > To have these activities funded, which typical grants just cannot fund, > > is the main achievement of ELIXIR. So, many thanks, and let us support > > whatever comes up and let us come up with something ourselves. > > > > Steffen > > > > > > > > >
