Hi,

since we now have seqan2 available I tried to build the latest flexbar
from Github (watch file in SVN points to this location).  Unfortunately
I get a build error when trying to build flexbar 2.7.0 agains seqan
2.2.0:

...
/usr/include/seqan/align/dp_setup.h:286:29:   required from 'typename 
seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type 
seqan::_setUpAndRunAlignment(seqan::DPContext<TScoreValue, TGapCosts>&, 
TTrace&, seqan::DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const 
TSequenceV&, const seqan::Score<TScoreValue2, TScoreSpec>&, const 
seqan::AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with 
TScoreValue = int; TGapModel = seqan::Tag<seqan::AffineGaps_>; 
TDPScoutStateSpec = seqan::Tag<seqan::Default_>; TTrace = 
seqan::String<seqan::TraceSegment_<long unsigned int, long unsigned int>, 
seqan::Alloc<> >; TSequenceH = seqan::String<seqan::SimpleType<unsigned char, 
seqan::Dna5_>, seqan::Alloc<> >; TSequenceV = 
seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; 
TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix<seqan::SimpleType<unsigned 
char, seqan::Dna5_>, seqan::Tag<seqan::Default_> >; TDPType = 
seqan::GlobalAlignment_<>; TBand = 
seqan::DPBandConfig<seqan::Tag<seqan::BandOff_> >; TFreeEndGaps = 
seqan::FreeEndGaps_<seqan::True, seqan::True, seqan::True, seqan::True>; 
TTraceConfig = 
seqan::TracebackOn<seqan::TracebackConfig_<seqan::Tag<seqan::SingleTrace_>, 
seqan::Tag<seqan::GapsLeft_> > >; typename 
seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type = int]'
/usr/include/seqan/align/dp_setup.h:307:33:   required from 'typename 
seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type 
seqan::_setUpAndRunAlignment(TTrace&, seqan::DPScoutState_<TDPScoutStateSpec>&, 
const TSequenceH&, const TSequenceV&, const seqan::Score<TScoreValue2, 
TScoreSpec>&, const seqan::AlignConfig2<TDPType, TBand, TFreeEndGaps, 
TTraceConfig>&, const TGapModel&) [with TTrace = 
seqan::String<seqan::TraceSegment_<long unsigned int, long unsigned int>, 
seqan::Alloc<> >; TDPScoutStateSpec = seqan::Tag<seqan::Default_>; TSequenceH = 
seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; 
TSequenceV = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, 
seqan::Alloc<> >; TScoreValue2 = int; TScoreSpec = 
seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::Dna5_>, 
seqan::Tag<seqan::Default_> >; TDPType = seqan::GlobalAlignment_<>; TBand = 
seqan::DPBandConfig<seqan::Tag<seqan::BandOff_> >; TFreeEndGaps = 
seqan::FreeEndGaps_<seqan::True, seqan::True, seqan::True, seqan::True>; 
TTraceConfig = 
seqan::TracebackOn<seqan::TracebackConfig_<seqan::Tag<seqan::SingleTrace_>, 
seqan::Tag<seqan::GapsLeft_> > >; TGapModel = seqan::Tag<seqan::AffineGaps_>; 
typename seqan::Valsrc/CMakeFiles/flexbar.dir/build.make:65: recipe for target 
'src/CMakeFiles/flexbar.dir/Flexbar.cpp.o' failed
make[3]: *** [src/CMakeFiles/flexbar.dir/Flexbar.cpp.o] Error 1
make[3]: Leaving directory '/build/flexbar-2.7.0/obj-x86_64-linux-gnu'
CMakeFiles/Makefile2:88: recipe for target 'src/CMakeFiles/flexbar.dir/all' 
failed
make[2]: *** [src/CMakeFiles/flexbar.dir/all] Error 2


Any idea what might be wrong here?

Kind regards

       Andreas.

-- 
http://fam-tille.de

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