Hi,
since we now have seqan2 available I tried to build the latest flexbar
from Github (watch file in SVN points to this location). Unfortunately
I get a build error when trying to build flexbar 2.7.0 agains seqan
2.2.0:
...
/usr/include/seqan/align/dp_setup.h:286:29: required from 'typename
seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type
seqan::_setUpAndRunAlignment(seqan::DPContext<TScoreValue, TGapCosts>&,
TTrace&, seqan::DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const
TSequenceV&, const seqan::Score<TScoreValue2, TScoreSpec>&, const
seqan::AlignConfig2<TDPType, TBand, TFreeEndGaps, TTraceConfig>&) [with
TScoreValue = int; TGapModel = seqan::Tag<seqan::AffineGaps_>;
TDPScoutStateSpec = seqan::Tag<seqan::Default_>; TTrace =
seqan::String<seqan::TraceSegment_<long unsigned int, long unsigned int>,
seqan::Alloc<> >; TSequenceH = seqan::String<seqan::SimpleType<unsigned char,
seqan::Dna5_>, seqan::Alloc<> >; TSequenceV =
seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >;
TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix<seqan::SimpleType<unsigned
char, seqan::Dna5_>, seqan::Tag<seqan::Default_> >; TDPType =
seqan::GlobalAlignment_<>; TBand =
seqan::DPBandConfig<seqan::Tag<seqan::BandOff_> >; TFreeEndGaps =
seqan::FreeEndGaps_<seqan::True, seqan::True, seqan::True, seqan::True>;
TTraceConfig =
seqan::TracebackOn<seqan::TracebackConfig_<seqan::Tag<seqan::SingleTrace_>,
seqan::Tag<seqan::GapsLeft_> > >; typename
seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type = int]'
/usr/include/seqan/align/dp_setup.h:307:33: required from 'typename
seqan::Value<seqan::Score<TScoreValue2, TScoreSpec> >::Type
seqan::_setUpAndRunAlignment(TTrace&, seqan::DPScoutState_<TDPScoutStateSpec>&,
const TSequenceH&, const TSequenceV&, const seqan::Score<TScoreValue2,
TScoreSpec>&, const seqan::AlignConfig2<TDPType, TBand, TFreeEndGaps,
TTraceConfig>&, const TGapModel&) [with TTrace =
seqan::String<seqan::TraceSegment_<long unsigned int, long unsigned int>,
seqan::Alloc<> >; TDPScoutStateSpec = seqan::Tag<seqan::Default_>; TSequenceH =
seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >;
TSequenceV = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>,
seqan::Alloc<> >; TScoreValue2 = int; TScoreSpec =
seqan::ScoreMatrix<seqan::SimpleType<unsigned char, seqan::Dna5_>,
seqan::Tag<seqan::Default_> >; TDPType = seqan::GlobalAlignment_<>; TBand =
seqan::DPBandConfig<seqan::Tag<seqan::BandOff_> >; TFreeEndGaps =
seqan::FreeEndGaps_<seqan::True, seqan::True, seqan::True, seqan::True>;
TTraceConfig =
seqan::TracebackOn<seqan::TracebackConfig_<seqan::Tag<seqan::SingleTrace_>,
seqan::Tag<seqan::GapsLeft_> > >; TGapModel = seqan::Tag<seqan::AffineGaps_>;
typename seqan::Valsrc/CMakeFiles/flexbar.dir/build.make:65: recipe for target
'src/CMakeFiles/flexbar.dir/Flexbar.cpp.o' failed
make[3]: *** [src/CMakeFiles/flexbar.dir/Flexbar.cpp.o] Error 1
make[3]: Leaving directory '/build/flexbar-2.7.0/obj-x86_64-linux-gnu'
CMakeFiles/Makefile2:88: recipe for target 'src/CMakeFiles/flexbar.dir/all'
failed
make[2]: *** [src/CMakeFiles/flexbar.dir/all] Error 2
Any idea what might be wrong here?
Kind regards
Andreas.
--
http://fam-tille.de
