I forgot to mention that you need to build and install https://anonscm.debian.org/git/debian-med/python-pyflow.git
first ... On Tue, Nov 15, 2016 at 05:14:33PM +0100, Andreas Tille wrote: > Hi folks, > > I have injected manta[1] into packaging Git. Upstream contains several > projects as tar.bz2 which are packaged for Debian and rebuilds these in > the packaging process. I tried to tweak the cmake input files to > reference the Debian packaged alternatives. I was stumbling about > samtools (manta upstream contains version 1.2 - we just have 1.3 which > might be a source of failure due to incompatibilities but lets ignore > this for the moment). The cmake build system needs a libbam.a which is > only build by the legacy libbam-dev 0.1.19. I wonder how we can get > a libbam.a from recent samtools - or is there any other solution to > build manta? > > Here is the error message the current builds ends with: > > ... > make[3]: *** No rule to make target '/libhts.a', needed by > 'src/c++/lib/applications/GenerateSVCandidates/test/manta_unit_test_GenerateSVCandidates'. > Stop. > make[3]: Leaving directory '/build/manta-1.0.2+dfsg/obj-x86_64-linux-gnu' > CMakeFiles/Makefile2:1831: recipe for target > 'src/c++/lib/applications/GenerateSVCandidates/test/CMakeFiles/manta_unit_test_GenerateSVCandidates.dir/all' > failed > ... > > Kind regards > > Andreas. > > [1] https://anonscm.debian.org/git/debian-med/manta.git > > -- > http://fam-tille.de > > -- http://fam-tille.de
