On 16 December 2016 at 10:02, Andreas Tille <[email protected]> wrote: > Hi, > > when trying to run Bioperl-run unit tests while BioPerl 1.7.1 is > installed (on a Debian system with the current Debian package in > unstable) I get lots of errors of type > > Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install > the Bio::Tools::Run::WrapperBase module) > > When checking BioPerl 1.6.x hat a file Bio/Tools/Run/WrapperBase.pm > which was removed in BioPerl 1.7.x and thus lots of tests are failing. > > Kind regards > > Andreas.
That module (Bio::Tools::Run::WrapperBase) is now part of bioperl-run [1]. Unfortunately, it seems that there has been no new release of bioperl-run since that change. I am not sure what's the plan for bioperl to make a new release of bioperl-run (adding bioperl mailing list to CC) but can Debian patch bioperl-run to include those files like upstream has done for the next release? Carnë [1] https://github.com/bioperl/bioperl-run/commit/acd57a7d14112c5fd2cd979005b072efdaf57679
