Hi all, thanks for checking these.
>> roary > > Build, however when trying to simulate the test suite via > > cd t/data/genbank_gbff > roary -f out *.gff > > Please cite Roary if you use any of the results it produces: > Andrew J. Page, Carla A. Cummins, Martin Hunt, Vanessa K. Wong, Sandra > Reuter, Matthew T. G. Holden, Maria Fookes, Daniel Falush, Jacqueline A. > Keane, Julian Parkhill, > "Roary: Rapid large-scale prokaryote pan genome analysis", > Bioinformatics, 2015 Nov 15;31(22):3691-3693 > doi: http://doi.org/10.1093/bioinformatics/btv421 > Pubmed: 26198102 > > Use of uninitialized value in require at > /usr/lib/x86_64-linux-gnu/perl/5.24/Encode.pm line 61. > > > This does not look good even if it does not look related to BioPerl. In fact, it doesn’t look related to Roary either. It’s apparently a missing Encode/ConfigLocal.pm in the coded provided by libencode-perl, but not a fatal issue here as it doesn’t seem to impact the result or performance of Roary. It’s been reported before [1] and I will let upstream know that the warning is back. Not a blocker AFAICS. Cheers Sascha
