Hi, It seems the problem of debian arch-specific lib install paths is solved by using the CMake GNUInstallDirs package (https://wiki.debian.org/Multiarch/Implementation#CMake).
I will update the CMake repositories to use it, which should solve the problem. Julien: please wait until I've updated the CMakes before tagging the release. -- François Gindraud Ingénieur développement bioinformatique LBBE, équipe BPGE, projet Grasp, Labex Ecofect Bureau 116, Bâtiment Mendel 1er étage, UCBL ________________________________________ De : Andreas Tille <[email protected]> Envoyé : mardi 6 juin 2017 11:23 À : GINDRAUD FRANCOIS Cc : Julien Yann Dutheil; Debian Med Project List Objet : Re: Open issue with libbpp-core Hi, On Mon, Jun 05, 2017 at 12:14:13PM +0000, GINDRAUD FRANCOIS wrote: > I'm the one responsible for the CMake upgrade in the Bio++ libraries. > > Since this version, Bio++ uses CMake package files to represent internal > module dependencies, and allow users to use find_package(bpp-<module>). > > To support this, CMake generates a few files in > <prefix>/lib/cmake/bpp-<module>/*.cmake, which are required to enable > find_package to work. > > In your case it seems bpp-seq is unable to find the cmake package files of > core (especially, bpp-core-config.cmake). > > According to > https://launchpad.net/ubuntu/+source/libbpp-core/2.3.0-1~exp1/+build/12681398, > which seems to have a log of your build of bpp-core, these files are missing > from the bpp-core-devel package. > > This explains why they cannot be found by bpp-seq. > > To fix the error you must ensure these files are included in the devel > package. You are right. I just commited a change which installs the missing files. However, I have remaining problems wo build libbpp-seq: ... dh_auto_configure <------>cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -- The CXX compiler identification is GNU 6.3.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Error at /usr/lib/cmake/bpp-core/bpp-core-targets.cmake:90 (message): The imported target "bpp-core-static" references the file "/usr/lib/libbpp-core.a" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/bpp-core/bpp-core-targets.cmake" but not all the files it references. Cmake is correct that the said file does not exist since it is rather in the multiarch dir - for amd64 architecture for instance /usr/lib/x86_64-linux-gnu/libbpp-core.a Do you have any idea how to fix the cmake files to respect multiarch? Kind regards Andreas. > ---------- Forwarded message ---------- > From: Andreas Tille <[email protected]<mailto:[email protected]>> > Date: Sat, Jun 3, 2017 at 4:29 PM > Subject: Re: Open issue with libbpp-core > To: Julien Yann Dutheil > <[email protected]<mailto:[email protected]>> > Cc: Debian Med Project List > <[email protected]<mailto:[email protected]>> > > > Hi Julien, > > On Sat, May 27, 2017 at 09:23:45PM +0200, Julien Yann Dutheil wrote: > > We finally managed to update our Bio++ libraries and programs and released > > a new version. We did a lot of cleaning in the CMake files, removed the > > .all include files and moved the code to C++11. Everything is now on github > > and has been tagged as suggested. Here is the list (repos + tag): > > ... > > > > We hope this will make the packaging as smooth as possible. Please let me > > know if there is more we can do. > > Thanks for the heads up. Since we are in "frozen policy" uploads are > currently only possible to experimental. So I started uploading > libbpp-core (2.3.0-1~exp1) but I had some issue to build > libbpp-seq-2.3.0 against this. I was running into: > > > ... > -- Detecting CXX compile features - done > CMake Error at CMakeLists.txt:55 (find_package): > By not providing "Findbpp-core.cmake" in CMAKE_MODULE_PATH this project has > asked CMake to find a package configuration file provided by "bpp-core", > but CMake did not find one. > > Could not find a package configuration file provided by "bpp-core" > (requested version 2.0.4) with any of the following names: > > bpp-coreConfig.cmake > bpp-core-config.cmake > > Add the installation prefix of "bpp-core" to CMAKE_PREFIX_PATH or set > "bpp-core_DIR" to a directory containing one of the above files. If > "bpp-core" provides a separate development package or SDK, be sure it has > been installed. > > > -- Configuring incomplete, errors occurred! > See also > "/build/libbpp-seq-2.3.0/obj-x86_64-linux-gnu/CMakeFiles/CMakeOutput.log". > <------>"tail -v -n +0 CMakeCache.txt" > ==> CMakeCache.txt <== > ... > > despite libbpp-core was in the Build-Depends. Any hint from a cmake expert > how to solve this? > > Kind regards > > Andreas. > > -- > http://fam-tille.de > > > > -- > Julien Y. Dutheil, Ph-D > 0 (+49) 4522 763 298 > > § Max Planck Institute for Evolutionary Biology > Molecular Systems Evolution > Department of Evolutionary Genetics > Plön -- GERMANY > > § Institute of Evolutionary Sciences - Montpellier > University of Montpellier 2 -- FRANCE -- http://fam-tille.de
