On 10/11/2017 05:26 PM, Michael Crusoe wrote: > Hello, > > A quick internet search failed me, so my apologies if the answer to > this is well known. > > Is there a service that automatically builds software containers for > each Debian Med application* package? > > As discussed at this week's biocontainers workshop, while they > themselves won't be building containers for non-bioconda packages, > they are happy to list container images built by other communities. > > So wherever we have a Debian package for a bio/med app that isn't in > bioconda, it would be nice to auto create a Docker/Singularity > container for inclusion in the biocontainers.pro > <http://biocontainers.pro> registry. Since the container build process > would be mostly just `apt install ${package}` (and thus fairly quick) > we can leverage existing free services to keep these up to date. Hi Mickael, with the new continuous integration I gonna implement in biocontainers, I will inject all debianmed "binary" packages that do not have a bioconda equivalent (request from biocontainers team) and thus create docker/singularity containers at regular interval, based of course on a Debian container image. But those will not be *official* debian containers, just an initiative to make them available.
> > *Non-library, non-dev, non-service. Basically the command line tools > used by researchers to perform data analysis and transformation. -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
