Hi Fabian, thanks for working on this.
On Mon, Dec 04, 2017 at 02:09:48PM +0100, Fabian Klötzl wrote: > I just pushed some changes to build tophat with our version of libbam. > Not sure if the previously mentioned issue in [1] is fixed; can't test, Thanks to the test suite we now know that the issue is not solved yet: $ sh run-unit-test [2017-12-04 17:28:54] Beginning TopHat run (v2.1.1) ----------------------------------------------- [2017-12-04 17:28:54] Checking for Bowtie Bowtie version: 2.3.3.1 Error locating program: samtools_0.1.18 Unfortunately a grep for this explicite string has several hits. I have no idea what might happen if we replace it by /usr/bin/samtools. Kind regards Andreas. -- http://fam-tille.de