On 05/02/2018 11:04 AM, Andreas Tille wrote: > Hi Olivier, > > thanks a lot for your work on this and the status update. > > On Wed, May 02, 2018 at 09:39:44AM +0200, Olivier Sallou wrote: >> after quick and dirty packaging of picard new dependencies (done >> locally, can't be uploaded in this state), I could build picard-tools. > Feel free to be more verbose in case you might need some help with those > preconditions. that's ok for dependencies, it just need some work for cleanup, set copyright etc.... just wanted to get a quick "package" to validate picard-tools. I don't want to do too much work on dependencies if it does not work with picard. Once picard is ok, I will do the job to do real packaging on those. > >> However, there are many failing tests (168 at this time), though ~2800 >> tests are fine. >> >> Some failures I can"t explain (freezing, thread errors , with no >> detailled log) and others where picard seems to fail with htsjdk (the >> one from experimental, with nio errors). >> >> >> I am not really confident that I will be able to debug all those errors, >> which may be related to debian env (patching, gradle etc...) or from >> packaged dependencies. >> >> For htsjdk test errors, it seems they are all related with 2 recurrent >> errors among failed tests >> ... > May be we can ask on debian-java about some gradle (or similar) related > issues. But before we surely need those predependencies to keep the > worklow of helpful people low. I created an issue upstream for one of the issue (freezing of tests). for the other ones, it may be related to the dependencies I packaged, but difficult to know (wrong version ? missing something?). The issue is there is a stacktrace but no real log helping to understand what is wrong. Will need much more time to try to fix this. > > Kind regards > > Andreas. >
-- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
