On 05/04/2018 02:30 PM, Andreas Tille wrote: > Hi Olivier, > > On Fri, May 04, 2018 at 09:22:11AM +0200, Olivier Sallou wrote: >> I have updated git repo for picard-tools. >> >> Dependencies are in java team (gkl, gatk-native-bindings, barclay) but >> not uploaded yet. Instead I uploaded them to experimental for the >> moment, waiting for full validation with picard-tools. > Cool! From the naming it smells like a good precondition for GATK4 > which should be also packaged (rather sooner than later if I understood > correctly). > >> I disabled unit tests due to a testng issue (I created a bug for this), >> but I patched testng locally and could run all picard-tools unit tests. > Sounds promising. Again, thanks a lot. > >> I think however that it would be nice to get other people validation for >> picard-tools, if you could test build/run. Task was indeed not easy and >> I'd like to be sure it works in other environments. > I admit my hope to get more testers from this list is limited. (I > explicitly added Vincent who is also in Uploaders but as far as I > remember is not reading this list very regularly.) Thus I'd be in > favour of uploading at least those preconditions to unstable. Since no > package in unstable depends from these we can not really break anything. > In general I also think that uploading to unstable even for picard-tools > is fine (may be after testng bug is fixed) and use normal Debian QA > tools as well as rdepends as "testers" in addition to potential readers > here. We are in the middle of a release cycle and there is sufficient > time to fix issues now. > >> I faced issues with Java 9 but more with Java 10 which is now default >> (in fact may work only with Java 10+). > Ahhh, will we see another Java migration before buster will be frozen? > >> I tested it with htsjdk from experimental. > I guess there is no other chance since it depends from the version > there, right?
I can't upload to unstable as one of the deps (gkl) depends on htsjdk , and need a *recent* one (the one in experimental works, the one in sid fails). So to upload those picard-tools deps, we first need to put htsjdk in sid > >> When I have green flag, I can upload new dependencies to unstable before >> uploading picard-tools. > So green flag from my side without testing anything since I do not even > have a better idea how to test ... > > Kind regards > > Andreas. > -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
