Hi,
by chance I stumbled upon nanocall[1] which does not build
unfortunately:
cd /build/nanocall-0.7.4/obj-x86_64-linux-gnu/nanocall && /usr/bin/c++
-I/build/nanocall-0.7.4/obj-x86_64-linux-gnu
-I/build/nanocall-0.7.4/src/builtin_models
-I/build/nanocall-0.7.4/src/tclap/include -I/build/nanocall-0.7.4/src/nanocall
-I/build/nanocall-0.7.4/src/version -I/usr/include/hpptools -isystem
/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/nanocall-0.7.4=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -std=c++11 -pthread -Wall -Wextra -pedantic -fmax-errors=1
-O3 -DNDEBUG -DDISABLE_ASSERTS -o CMakeFiles/nanocall.dir/Builtin_Model.cpp.o
-c /build/nanocall-0.7.4/src/nanocall/Builtin_Model.cpp
In file included from /build/nanocall-0.7.4/src/nanocall/nanocall.cpp:10:
/build/nanocall-0.7.4/src/nanocall/Pore_Model.hpp:99:48: error: 'Model_Entry'
in namespace 'fast5' does not name a type
Pore_Model_State& operator = (const fast5::Model_Entry& e)
^~~~~~~~~~~
compilation terminated due to -fmax-errors=1.
make[3]: *** [nanocall/CMakeFiles/nanocall.dir/build.make:66:
nanocall/CMakeFiles/nanocall.dir/nanocall.cpp.o] Error 1
make[3]: Leaving directory '/build/nanocall-0.7.4/obj-x86_64-linux-gnu'
I've checked fast5 at Github where I was seeking Model_Entry
inside the code but failed[2]. I noticed that Steffen had
added a quilt patch:
git blame debian/patches/series
a8385d1e (Andreas Tille 2016-09-14 10:39:20 +0200 1)
use_debian_packaged_libs.patch
8115dd97 (Andreas Tille 2016-09-14 15:06:57 +0200 2) no_rpath.patch
c7c47d8c (Andreas Tille 2016-09-14 15:37:17 +0200 3) tclap.patch
a7d2b4d8 (Steffen Moeller 2018-04-30 23:42:12 +0200 4)
circumvent_compile_error.patch
named "circumvent_compile_error.patch" but there is no such patch.
Steffen, did you found some trick to work arount this comile error which
you simply forgot to `git add` or is this simply a remaining in the
series file that should be removed?
Kind regards
Andreas.
[1] https://salsa.debian.org/med-team/nanocall
[2]
https://github.com/mateidavid/fast5/search?q=Model_Entry&unscoped_q=Model_Entry
--
http://fam-tille.de
