On 28/05/2018 15:03, Andreas Tille wrote: > [...] > I admit I tried to reproduce the issue but failed. I've applied the > patch anyway and just uploaded > > " 2.7.6-1 > > Tony, thanks for the patch and the detailed explanation (which I've > added to the quilt patch). Please let us know if there are any > remaining issues.
Hi, Andreas. I ran a QIIME2 workshop in Vienna using an alpha version of Bio-Linux 9 based on Ubuntu-MATE 18.04 LTS + med-bio, med-bio-dev and Bioconda plus a few other packages including x2goserver. Everything worked well, but your update to "metaphlan2" is not available in the Ubuntu repository: > root@beluga:~# lsb_release -d > Description: Ubuntu 18.04.1 LTS > root@beluga:~# apt policy metaphlan2 > metaphlan2: > Installed: 2.7.5-2 > Candidate: 2.7.5-2 > Version table: > *** 2.7.5-2 100 > 100 /var/lib/dpkg/status > 2.7.5-1 500 > 500 http://gb.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages > 500 http://gb.archive.ubuntu.com/ubuntu bionic/universe i386 Packages > root@beluga:~# cat /etc/debian_version > buster/sid Any idea if/when your "metaphlan2" update will arrive in buster/sid? For the moment, I'm installing my patched deb to complete any "med-bio" installations I do under Ubuntu 18.04 LTS. I did several installations while I was in Vienna. I've done many more in Milan and elsewhere too. Thanks again for all the effort you and the Debian-Med team have put into making the 'missing' Bio-Linux packages available in "med-bio". Bye, Tony. -- Minke Informatics Limited, Registered in Scotland - Company No. SC419028 Registered Office: 3 Donview, Bridge of Alford, AB33 8QJ, Scotland (UK) tel. +44(0)19755 63548 http://minke-informatics.co.uk mob. +44(0)7985 078324 mailto:[email protected]
