I now updated pybedtools to 0.8.0.
bcbio also builds with that newer version.
4 tests of the many pybedtools fail, one of them about internet access,
but also one that looks like an error. Could someone please have a look?
I'll upload with tests disabled in the meantime.
Best,
Steffen
On 17.01.19 16:59, Michael Crusoe wrote:
Glad to hear about the BCBIO progress!
I removed those packages, they were only removed due to lack of use,
so it is not problem if you bring them back.
În joi, 17 ian. 2019 la 17:53, Steffen Möller <[email protected]
<mailto:[email protected]>> a scris:
Hello,
I just finished what started at 2018 Sprint, i.e. the packaging of
bcbio. Their december release builds without a patch and autotests
with
Python 3 are fine. I just uploaded 1.1.2 to salsa - please have a
look.
Now, running pbuilder I ran into missing packages for
https://tracker.debian.org/pkg/python-pybedtools
https://tracker.debian.org/pkg/python-gffutils
which in the meantime have been removed from the distribution. The
source tree of bcbio makes strong direct use of them both. Can we
have
them back? There was no technical reason for these packages to
disappear, right?
Best,
Steffen
--
Michael R. Crusoe
Co-founder & Lead, Common Workflow Language project
<http://www.commonwl.org/>
Direktorius, VšĮ "Darbo eigos", Vilnius, Lithuania
https://orcid.org/0000-0002-2961-9670
<https://impactstory.org/u/0000-0002-2961-9670>
[email protected] <mailto:[email protected]>
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