Hi Michael, Indeed, Andreas is right. The tagging scheme for RapMap is as follows. Versions of the code that are used as a library for salmon (or sailfish), are tagged as such. That is, they have the `salmon-` prefix before the version. This ensures that each release of salmon or sailfish is tied to a specific commit of rapmap for reproducible builds. However, the master branch has versions tagged without any prefix (apart from `v`). That being said, one of the main points of the recent release was to sync-up with all of the recent developments made in the develop-salmon branch, so that the next release on that branch `salmon-0.13.0` should be essentially the same as what was released in v0.6.0.
Best, Rob On Feb 5, 2019, 4:57 AM -0500, Andreas Tille <[email protected]>, wrote: > Hi, > > On Tue, Feb 05, 2019 at 11:17:25AM +0200, Michael Crusoe wrote: > > We packaged rapmap for Debian because we were packaging salmon as well. > > Looks like we adopted the numbering of the salmon-v* release of rapmap > > (recently 0.12) so this 0.6.0 release will currently be ignored as it is > > numerically smaller. > > > > Is that okay with you? What would you like done in the future? > > As far as I understood (which does not mean that it is correct) new > rapmap releases are featuring a 'salmon-' prefix and are closely related > to salmon releases. This understanding is in fact in contrast to the > recent rapmap 0.6.0 release and is not visible for our scanner for new > releases that is at version 0.12 as Michael said. > > Kind regards > > Andreas. > > > În mar., 5 feb. 2019 la 06:59, Rob Patro <[email protected]> a scris: > > > > > This release brings the master branch and tagged release up to date with > > > many of the bug fixes, developments and improvements that have been going > > > into the develop-salmon branch in support of salmon development. Among > > > the most important new features in this release is the ability to have > > > rapmap apply *selective-alignment* to improve the sensitivity and > > > specificity of the mappings. For more details on *selective-alignment* > > > and mapping validation, refer to the release notes of salmon > > > <https://github.com/COMBINE-lab/salmon/releases/tag/v0.12.0> --- and > > > specifically options related to the --validateMappings. This release also > > > adds the ability to optionally write out unmapped reads in the output SAM > > > with the -u flag. > > > > > > — > > > You are receiving this because you are subscribed to this thread. > > > View it on GitHub > > > <https://github.com/COMBINE-lab/RapMap/releases/tag/v0.6.0> or unsubscribe > > > <https://github.com/COMBINE-lab/RapMap/unsubscribe_via_email/ABROCCsHsxNxyPKPBTagcINRPBQDlL_rks5vKQ-jgaJpZM4CTBbL> > > > from all notifications for this repository. > > > > > > > > > -- > > Michael R. Crusoe > > Co-founder & Lead, Common Workflow Language project > > <http://www.commonwl.org/> > > Direktorius, VšĮ "Darbo eigos", Vilnius, Lithuania > > https://orcid.org/0000-0002-2961-9670 > > <https://impactstory.org/u/0000-0002-2961-9670> > > [email protected] > > +1 480 627 9108 / +370 653 11125 > > -- > http://fam-tille.de
