Dear Andreas, On Tue, 12 Mar 2019 at 09:25, Andreas Tille <[email protected]> wrote:
> Hi Liubov, > > On Tue, Mar 12, 2019 at 12:47:59AM +0200, Liubov Chuprikova wrote: > > The old qiime(1) dependencies were not deleted from the d/control. I have > > pushed the required changes. > > Thanks a lot for cleaning up behind me since I obviously did not my duty > as developer and installed the package before uploading it. This is also my fault since I remember me adapting d/copyright for Qiime2 and thinking about adapting d/control but I forgot to do it in the end. > Since the > qiime package does not even install I am wondering if there is a way to check this before pushing it to salsa? I have found here [1] how to use piuparts package for this and it worked on my computer. Maybe there are other options... > I filed bug #924373 (which is > actually fixed by your commit). My bad for not checking earlier - so > qiime did not make it into testing which is really a shame. > And we don't have CLI for qiime2 in testing anyway. But back to the topic: You removed not only the dependencies that are > preventing qiime from installing successfully but also a lot of others. > I wonder whether Qiime2 is now independent from the lot of tools it has > used before. Is there any relevant documentation or can we sneak into > the conda rules which might have the relevant metadata as well? I was filling in d/control according to upstream's metadata [2]. Indeed, there are not a lot of dependencies. > For > instance I cloned the bioconda repository on Github[1] but it only > contains rules for qiime version 1.9.1[2]. So my question is: If > Qiime2 is propagating the installation via Conda is there some other > repository containing the conda metadata? I could imagine that we can > learn from this about how to properly craft our dependencies. > Qiime2 is provided by anaconda in some strange way [3], I wasn't able to find out their metadata. Un saludo, Liuba [1] https://piuparts.debian.org/doc/README.html [2] https://github.com/qiime2/qiime2/blob/master/ci/recipe/meta.yaml [3] https://anaconda.org/qiime2
