Here are my merge requests to fix the build: https://salsa.debian.org/python-team/modules/python-pomegranate/merge_requests/1 https://salsa.debian.org/python-team/modules/python-pomegranate/merge_requests/2 https://salsa.debian.org/python-team/modules/python-pomegranate/merge_requests/3
On Mon, Sep 16, 2019 at 6:14 PM Andreas Tille <[email protected]> wrote: > On Mon, Sep 16, 2019 at 11:05:27AM +0200, Steffen Möller wrote: > > Heya, > > > > Seems like I have removed everything locally already upon acceptance of > > pomegranate. I am traveling. With hindsight from past race conditions > > with Andreas - what should I do? > > Please coordinate with Michael. I have no idea what to do, sorry. > > Have a safe travel > > Andreas. > > > Cheers, > > Steffen > > > > > > On 16.09.19 09:33, Andreas Tille wrote: > > > Hi Michael, > > > > > > On Sun, Sep 15, 2019 at 10:41:08PM +0900, Michael Crusoe wrote: > > > > python-pomegranate was accepted on 2019-08-31, but now we need a > source > > > > only upload > > > > > > > > Steffen, can you do a source only upload of python-pomegranate so > cnvkit > > > > can migrate? > > > I tried to rebuild but it fails. Even the dh_auto_clean target. I > added > > > a ' || true' but this did not helped in the end (so I did not pushed > that > > > hack). Here is the log: > > > > > > > > > > > > dh_auto_clean || true > > > pybuild --clean --test-nose -i python{version} -p 3.7 > > > I: pybuild base:217: python3.7 setup.py clean > > > Traceback (most recent call last): > > > File "setup.py", line 61, in <module> > > > extensions = cythonize( extensions ) > > > File "/usr/lib/python3/dist-packages/Cython/Build/Dependencies.py", > line 967, in cythonize > > > aliases=aliases) > > > File "/usr/lib/python3/dist-packages/Cython/Build/Dependencies.py", > line 812, in create_extension_list > > > for file in nonempty(sorted(extended_iglob(filepattern)), "'%s' > doesn't match any files" % filepattern): > > > File "/usr/lib/python3/dist-packages/Cython/Build/Dependencies.py", > line 111, in nonempty > > > raise ValueError(error_msg) > > > ValueError: 'pomegranate/distributions/*.pyx' doesn't match any files > > > E: pybuild pybuild:341: clean: plugin distutils failed with: exit > code=1: python3.7 setup.py clean > > > dh_auto_clean: pybuild --clean --test-nose -i python{version} -p 3.7 > returned exit code 13 > > > # cleaning up auto-generated files > > > find . -name "*.c" -delete > > > rm -rf .pybuild > > > make[1]: Leaving directory '/build/python-pomegranate-0.11.1+dfsg' > > > dh_autoreconf_clean -O--buildsystem=pybuild > > > dh_clean -O--buildsystem=pybuild > > > rm -f debian/debhelper-build-stamp > > > rm -rf debian/.debhelper/ > > > rm -f -- debian/python3-pomegranate.substvars > debian/python-pomegranate-doc.substvars debian/files > > > rm -fr -- debian/python3-pomegranate/ debian/tmp/ > debian/python-pomegranate-doc/ > > > find . \( \( \ > > > \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr > -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) > -prune -o -type f -a \ > > > \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name > DEADJOE \ > > > -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ > > > -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ > > > -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' > \) \ > > > \) -exec rm -f {} + \) -o \ > > > \( -type d -a -name autom4te.cache -prune -exec rm > -rf {} + \) \) > > > dpkg-source -i.git -I.git -b python-pomegranate-0.11.1+dfsg > > > dpkg-source: info: using options from > python-pomegranate-0.11.1+dfsg/debian/source/options: > --extend-diff-ignore=^[^/]*[.]egg-info/ > > > dpkg-source: info: using source format '3.0 (quilt)' > > > dpkg-source: info: building python-pomegranate using existing > ./python-pomegranate_0.11.1+dfsg.orig.tar.xz > > > Useless use of concatenation (.) or string in void context at > /usr/share/perl5/Dpkg/Vendor/Ubuntu.pm line 143. > > > dpkg-source: info: building python-pomegranate in > python-pomegranate_0.11.1+dfsg-1.debian.tar.xz > > > dpkg-source: info: building python-pomegranate in > python-pomegranate_0.11.1+dfsg-1.dsc > > > debian/rules build > > > dh build --with python3 --buildsystem=pybuild > > > dh_update_autotools_config -O--buildsystem=pybuild > > > dh_autoreconf -O--buildsystem=pybuild > > > dh_auto_configure -O--buildsystem=pybuild > > > pybuild --configure --test-nose -i python{version} -p 3.7 > > > I: pybuild base:217: python3.7 setup.py config > > > Traceback (most recent call last): > > > File "setup.py", line 61, in <module> > > > extensions = cythonize( extensions ) > > > File "/usr/lib/python3/dist-packages/Cython/Build/Dependencies.py", > line 967, in cythonize > > > aliases=aliases) > > > File "/usr/lib/python3/dist-packages/Cython/Build/Dependencies.py", > line 812, in create_extension_list > > > for file in nonempty(sorted(extended_iglob(filepattern)), "'%s' > doesn't match any files" % filepattern): > > > File "/usr/lib/python3/dist-packages/Cython/Build/Dependencies.py", > line 111, in nonempty > > > raise ValueError(error_msg) > > > ValueError: 'pomegranate/distributions/*.pyx' doesn't match any files > > > E: pybuild pybuild:341: configure: plugin distutils failed with: exit > code=1: python3.7 setup.py config > > > dh_auto_configure: pybuild --configure --test-nose -i python{version} > -p 3.7 returned exit code 13 > > > make: *** [debian/rules:8: build] Error 255 > > > > > > > > > Any idea how to fix this? > > > > > > Kind regards > > > > > > Andreas. > > > > > > > > > -- > http://fam-tille.de > > -- Michael R. Crusoe Co-founder & Lead, Common Workflow Language project <http://www.commonwl.org/> https://orcid.org/0000-0002-2961-9670 <https://impactstory.org/u/0000-0002-2961-9670> [email protected] +1 480 627 9108
