Hey Andreas, thank you for your patch, I did forward this to the PHD student that is responsible for this part of the program. I think this will be done in a week or two, but i cannot promise anything.
Best regards, Paul On Mon, Sep 16, 2019 at 1:59 PM Andreas Tille <[email protected]> wrote: > Hi again, > > ahh, I missed also this mail. Would you be able to do finalise the port > I've started in a short timeframe? Its part of the test suite and for > the Debian package we really feel good if we do all tests we can do. > > Kind regards > > Andreas. > > On Sun, Jul 28, 2019 at 11:48:30AM +0200, Paul Klemm wrote: > > Hi Steffen, > > > > so first of all proteinortho doesnt need python (it just enables synteny > > analysis) but is not required for the usage of the "main"-program. > > Next proteinortho_ffadj_mcs.py only runs with python2 and is not > compatible > > with python3 yet. In the future we want to remove the python part > entirely > > from this project and rewrite proteinortho_ffadj_mcs.py in perl. > > > > Best regards, Paul > > > > > > Steffen Möller <[email protected]> schrieb am Sa. 27. Juli 2019 um > > 13:30: > > > > > Hi Paul, hi Andreas, > > > > > > I just had a look at > > > > https://salsa.debian.org/med-team/proteinortho/blob/master/debian/control > > > and found the dependency on plain good ole "python", which the version > 2 > > > of python and not (as one would rightously assume just any version of > > > python. Should this possibly be "python3", instead? In my understanding > > > this is why the package is not transitioning to testing as Debian > > > currently attempts to remove Python2 from the distribution. > > > > > > Best, > > > > > > Steffen > > > > > > On 17.07.19 16:26, Andreas Tille wrote: > > > > Hi Paul, > > > > > > > > On Wed, Jul 17, 2019 at 03:30:49PM +0200, Paul Klemm wrote: > > > >> I would like to test the package but i cannot find proteinortho > 6.0.6 > > > >> neither with apt-get install nor apt-cache search. Or is it too > early? > > > > New packages are uploaded to Debian unstable. You need to add this > to > > > > your sources.list (but be carefully and set your apt_preferences > > > > properly - otherwise the system tries to upgrade your whole system to > > > > unstable!) Or you download from here: > > > > > > > > https://tracker.debian.org/pkg/proteinortho > > > > > > > > and install it manually. > > > > > > > > Hope this helps > > > > > > > > Andreas. > > > > > > > >> On Tue, Jul 16, 2019 at 10:51 AM Andreas Tille <[email protected]> > > > wrote: > > > >> > > > >>> Hi Paul, > > > >>> > > > >>> On Tue, Jul 16, 2019 at 08:59:14AM +0200, Paul Klemm wrote: > > > >>>> Hey Andreas, > > > >>>> Sorry for the confusion, I was not aware of any rules. > > > >>> No problem to sort things out. :-) > > > >>> > > > >>>> And thank you very > > > >>>> much for your time and effort. > > > >>> You are welcome. It would help if you could test the package and > > > report > > > >>> any issue you might face. > > > >>> > > > >>> Kind regards > > > >>> > > > >>> Andreas. > > > >>> > > > >>>> Kind regards, Paul > > > >>>> > > > >>>> On Mon, Jul 15, 2019 at 8:52 PM Andreas Tille <[email protected]> > > > wrote: > > > >>>> > > > >>>>> Hi Paul, > > > >>>>> > > > >>>>> On Sat, Jul 13, 2019 at 05:06:05PM +0200, Andreas Tille wrote: > > > >>>>>> If you talk about a PR the source is probably on some Git > repository > > > >>>>>> (which I'm not aware about). Please let me know the Git > repository > > > >>>>>> and if there is a release tag it accordingly (we usually do not > > > >>>>>> package random commits or pull requests). > > > >>>>> I've now understood that you created a clone of the packaging > > > >>> repository > > > >>>>> in salsa and tried to upgrade the packaging. I admit I just > copied > > > >>> your > > > >>>>> work in the debian/ dir and commited this to the packaging > > > repository. > > > >>>>> I really appreciate your intend to help, but there are some rules > > > >>>>> specified in Debian Med team policy[1] which are simplifying the > > > >>>>> maintenance in the team. You are happily invited to be guided > into > > > >>>>> these rules. Otherwise it might be easier if you simply ping > here on > > > >>>>> the list that some new upstream version is out. Usually its a > quite > > > >>>>> automatic process to upgrade (but the proteinortho 6.x series was > > > >>> hidden > > > >>>>> for our tools since the download location had changed - this > kind of > > > >>>>> change is very important to know for the packaging). > > > >>>>> > > > >>>>> Kind regards and thanks for your effort in any case > > > >>>>> > > > >>>>> Andreas. > > > >>>>> > > > >>>>> [1] https://med-team.pages.debian.net/policy/ > > > >>>>> > > > >>>>> -- > > > >>>>> http://fam-tille.de > > > >>>>> > > > >>>>> > > > >>>> -- > > > >>>> Paul Klemm > > > >>>> Department of Pharmaceutical Chemistry > > > >>>> Philipps-University Marburg > > > >>>> Marbacher Weg 6, 35037 Marburg, Germany > > > >>>> Phone: +49 (0)6421 28 22870 > > > >>>> Mobile: +49 (0)178 1387867 > > > >>> -- > > > >>> http://fam-tille.de > > > >>> > > > >>> > > > >> -- > > > >> Paul Klemm > > > >> Department of Pharmaceutical Chemistry > > > >> Philipps-University Marburg > > > >> Marbacher Weg 6, 35037 Marburg, Germany > > > >> Phone: +49 (0)6421 28 22870 > > > >> Mobile: +49 (0)178 1387867 > > > > > > > > > > > > > > -- > http://fam-tille.de > -- Paul Klemm Department of Pharmaceutical Chemistry Philipps-University Marburg Marbacher Weg 6, 35037 Marburg, Germany Phone: +49 (0)6421 28 22870 Mobile: +49 (0)178 1387867
