On 9/18/19 3:25 PM, Steffen Möller wrote: > Hallo, > > I just met Björn from the Conda community over here at the GCB in > Heidelberg. Over some sweet cake we agreed that it would be good to > mutually reference our packages. And we find that it would be mutually > beneficial to develop some training material that references both > conda and Debian packages, allowing the focus to remain on the > biology. The idea is to allow for the smoothest possible transition > from "Jugend forscht!"-/hobby/student side projects to HPC > environments and back, like to explain results to the public. We had > also some early thoughts about how to help automating the exchange of > links with some inter-distributional bots, also involving the > github-reinvented bio.tools.
We have some things in progress with Björn and other Elixir project members to link tools with the github/bio.tools stuff. Things are going slowly for some time. I am involved as part of biocontainers with Björn. Idea is to refer to biotools identifiers (biocontainers -> biotools, conda -> biotools etc..), and "inject" automatically in biotools the availability of a "package" (docker, conda, .....) Mickael and Hervé I think already worked in Debian to add some biotools identifiers in DebianMed packages metadata > Does anybody of folks reading this attend their upcoming BioHackathon > in Paris? > > You are all up for this, right? won't be there, I have an other meeting same date (though in Paris too...) Olivier > > I saw Björn do first pull requests towards the mutual links and have > created a bunch on my own now - a* and b* should be complete. > @Andreas, could you please perform your magic on integrating that data > with the udd? And did I do the modification of the blends' task page > correctly? > > Many thanks and greetings, > Steffen > > > -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
