On 11/13/19 1:42 PM, Steffen Möller wrote: > Hello, > > One of the packages that Debian should really shine with is IGV - it is > used throughout the world to inspect RNAseq data. And the ones running > IGV are not the ones who ran the analysis, so there should be tons of > folks out there using it who are not already installing conda in > routine. Admittedly, those will mostly be Windows/MacOS users, but hey, > also some Debianers. Popcon only lists one installation. Something must > be wrong. We are a bit behind with its version (2.4) with 2.7 being the > latest, but also conda users may use online web version, and is also integrated with Galaxy it seems > only has 2.5 to offer, so that is likely not the > reason. > > I just found it to be in conflict with R libraries I had on my system > because of dependencies on different versions of libhdf-dev - somewhat > unexpected.
could you be more explicit on issue? igv depends on libjhdf5 , if there are isues with libhdf might be issue with libjhdf5 itself? > The changelog found Sascha, Andreas and Olivier as past > active maintainers. Do you have further insights for me? And - is IGV a > reasonable package to be backported? > > Regards, > Steffen > -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
