Hi Liubov, On Sun, Dec 15, 2019 at 03:34:13PM +0100, Liubov Chuprikova wrote: > Hi Andreas, > > I was updating q2-types and had faced the following error: > > - > conflict: > pkg1: > package: python3-pandas > version: 0.25.3+dfsg-4 > architecture: all > unsat-conflict: python3-skbio:amd64 (< 0.5.5-2.1) > pkg2: > package: python3-skbio > version: 0.5.5-2 > architecture: amd64 > depchain1: > - > ... > E: Package build dependencies not satisfied; skipping > zsh: exit 3 sbuild -d sid --extra-package=../qiime_2019.10.0-1_all.deb > > So, python3-skbio breaks python3-pandas in unstable [1]. I saw that you've > started updating it to 0.5.5-3. Is there something that hampers its release > at the moment?
There are build time test suite errors: ... AssertionError:. Arrays are not almost equal to 7 decimals x and y nan location mismatch: x: array([[-2.5170346e-02, -3.8742000e-02, 3.7030794e-02, -1.8248587e-02, -1.2974103e-03, 8.1410679e-04, -1.7370121e-02, 3.6121106e-02, nan],... y: array([[-2.5170346e-02, -3.8742000e-02, 3.7030794e-02, -1.8248587e-02, -1.2974103e-03, 8.1410679e-04, -1.7370121e-02, 3.6121106e-02, 0.0000000e+00],... ====================================================================== FAIL: test__identify_sample_groups_not_strict (skbio.stats.tests.test_power.PowerAnalysisTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/python-skbio-0.5.5/.pybuild/cpython3_3.8_skbio/build/skbio/stats/tests/test_power.py", line 496, in test__identify_sample_groups_not_strict npt.assert_array_equal(known_pairs[k][i], test_pairs[k][i]) File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line 917, in assert_array_equal assert_array_compare(operator.__eq__, x, y, err_msg=err_msg, File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line 841, in assert_array_compare raise AssertionError(msg) AssertionError:. Arrays are not equal Mismatch: 100% x: array(['MM', 'WM'], dtype=object) y: array(['WM', 'MM'], dtype=object) ---------------------------------------------------------------------- Ran 2340 tests in 68.250s FAILED (SKIP=30, errors=2, failures=2) E: pybuild pybuild:341: test: plugin distutils failed with: exit code=1: cd /build/python-skbio-0.5.5/.pybuild/cpython3_3.8_skbio/build; python3.8 -m nose -v. which are discussed with upstream here: https://github.com/biocore/scikit-bio/issues/1681 https://github.com/biocore/scikit-bio/issues/1678 Any help is welcome. Kind regards Andreas. > [1] > https://salsa.debian.org/science-team/pandas/commit/387037efcb9744258e20965548ebe88823f11fea -- http://fam-tille.de