For GATK depending on GKL, I found an interesting page about building GATK on ARM.
https://gatkforums.broadinstitute.org/gatk/discussion/9971/gatk4-beta1-problem-some-questions-about-bwa-faga-pipeline-in-gatk4-beta1 > We use GATK4-beta1 in ARM,and have several questions about it: Jun On Sat, Feb 8, 2020 at 2:53 PM Michael Crusoe <[email protected]> wrote: > > https://github.com/Intel-HLS/GKL > A Java wrapper around an Intel optimized implementations of PairHMM, > Smith-Waterman, and DEFLATE. > > Uses SIMD intrinsics and assembly. > > At https://salsa.debian.org/misterc-guest/gkl/tree/experimental/simde is a > fork using the SIMD Everywhere library, but I lack the expertise to produce > source versions of the many assembler only routines. > > Any suggestions / contributions? > > -- > Michael R. Crusoe -- Jun | He - His - Him [email protected] / IRC: jaruga
