Hi Andreas and Pranav, On Thu, 9 Apr 2020 at 10:06, Andreas Tille <[email protected]> wrote:
> Hi folks, > > could anybody who works with sequences comment on this? > I have just checked the file and as Michael said during the Jitsi meeting, Plink (in Debian) uses such a format. I just tried quickly and it's possible to convert the file back to flat format: plink1 --bfile examples/genotypes --recode --tab --out genotypes --noweb and back to binary, here three files will be created: *.bed, *.fam, *.bim (those are in examples folder): plink1 --file genotypes --make-bed --out genotypes --noweb So, the binary can be excluded and replaced by a flat version of the file. Regards, Liubov In the worst case we would need to remove the bed file from the source > archive and as I learned recently fetch it in autopkgtest from remote. > > Kind regards > > Andreas. > > On Wed, Apr 08, 2020 at 09:00:10PM +0000, Scott Kitterman wrote: > > > > In debian/README.test it says: > > > > Notes on how this package can be tested. > > > > This package can be tested by running the provided test: > > > > sh run-unit-test > > > > in order to confirm its integrity. > > > > This file is not included, so README.test should be removed. > > > > How is the file examples/genotypes.bed generated? If it's in its > > preferred form of modification, then that should be documented, since it > is > > not clearly so. If it's not, the source and the tools need to be in > Debian > > and that should be documented. > > > > Please fix/remove the above and re-upload. > > > > Scott K > > > > > > > > > > === > > > > Please feel free to respond to this email if you don't understand why > > your files were rejected, or if you upload new files which address our > > concerns. > > > > > > _______________________________________________ > > Debian-med-packaging mailing list > > [email protected] > > > https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging > > -- > http://fam-tille.de > >
