Andreas Tille, on 2020-04-25 22:00:01 +0200: > On Sat, Apr 25, 2020 at 07:52:06PM +0200, Étienne Mollier wrote: > > Not sure what to do about the subsequent > > call to `python3 ../../../pauvre_main.py ...`, but it works at t > > time. > > I was wondering about the test script calling some executable named > pauvre which does not exist. May be the most elegant solution would > rather to add a wrapper script (say debian/bin/pauvre) add > > PATH=$(CURDIR)/debian/bin ... > > and simply use this wrapper which does not require any patch of the > code.
Thanks, this is now in place. I had to twist a thing or two for
having at least the first test (synplot) start up, but once
started, it ended well. For the moment, the second test, about
pauvre/lsi/test.py, still errors however; it has a hiccup on
handling the "-v" option:
ImportError: Failed to import test module: pauvre.lsi.test
Traceback (most recent call last):
File "/usr/lib/python3.8/unittest/loader.py", line 436, in
_find_test_path
module = self._get_module_from_name(name)
File "/usr/lib/python3.8/unittest/loader.py", line 377, in
_get_module_from_name
__import__(name)
File
"/mnt/data/emollier/debian/python-pauvre/.pybuild/cpython3_3.8/build/pauvre/lsi/test.py",
line 34, in <module>
f = open(sys.argv[2], 'r')
FileNotFoundError: [Errno 2] No such file or directory: '-v'
Maybe by shifting the argument, the test will go through the
expected code path.
> > FileNotFoundError: [Errno 2] File
> > b'/build/python-pauvre-0.1924/.pybuild/cpython3_3.8/build/pauvre/tests/testdata/gff_files/Bf201706.gff'
> > does not exist
> >
> > But, there is no such .gff file in the whole directory. There
> > are a few references to other repositories in various files, for
> > more testing, but haven't located such files yet.
>
> I'd check upstream Git repository. If you fail to find it there
> its probably a good idea to ask upstream.
They were finally stored in a side repository indeed, in its
gff_files directory:
https://github.com/conchoecia/beroe_forskalii_mitogenome
I am a bit unsure of the proper approach to get them available
at build test, so for the moment they are duplicated into the
directory debian/tests/gff_files.
Kind Regards,
--
Étienne Mollier <[email protected]>
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