Extracting the linked deb, one finds a binary and a very restrictive license. I do not believe that guppy source code is available nor it is likely to become available any time soon.
While some of their other basecallers have source code available, I would not call the license OSS: https://github.com/nanoporetech/flappie/blob/master/LICENCE.txt On Mon, Apr 27, 2020 at 2:58 PM Andreas Tille <ti...@debian.org> wrote: > Hi, > > I also tried my luck to find the source code for guppy base caller - but > failed. It would of great help if somebody could find out. > > Thanks a lot Jun for giving detailed hints so far > > Andreas. > > On Fri, Apr 24, 2020 at 08:41:22PM +0200, Jun Aruga wrote: > > > > > https://github.com/nf-core/nanoseq/blob/master/bin/scrape_software_versions.py > > > > guppy > > > Missing in Debian. Is it this project > > > https://staff.aist.go.jp/yutaka.ueno/guppy/ ? > > > > Hi, Andreas, > > No, it seems that guppy is a base caller provided by Oxford Nanopore > > technologies. > > > > ``` > > $ pwd > > /home/jaruga/git/nf-core/nanoseq > > > > $ grep -r guppy * > > ... > > conf/base.config: container = 'genomicpariscentre/guppy-gpu:3.4.4' > > conf/base.config: container = 'genomicpariscentre/guppy:3.4.4' > > ... > > > > Then check the containers Dockerfile. > > > > https://hub.docker.com/r/genomicpariscentre/guppy/dockerfile > > > wget -q > https://mirror.oxfordnanoportal.com/software/analysis/ont_guppy_cpu_${PACKAGE_VERSION}-1~xenial_amd64.deb > > > > https://hub.docker.com/r/genomicpariscentre/guppy-gpu/dockerfile > > > wget -q > https://mirror.oxfordnanoportal.com/software/analysis/ont_guppy_${PACKAGE_VERSION}-1~xenial_amd64.deb > > ``` > > > > It might not be open source software, seeing the following page. > > Here is a user's page about guppy in Japanese. I could not find the > > English page. > > You can see the guppy's screen shot on > > https://community.nanoporetech.com/downloads page. > > > > http://kazumaxneo.hatenablog.com/entry/2020/01/19/145940 > > > > > Thanks again Jun for your very helpful contribution > > > > You are welcome. Let me comment on your comments later. > > > > Cheers, > > Jun > > > > -- > > Jun | He - His - Him > > > > > > -- > http://fam-tille.de > > -- Michael R. Crusoe
