Hello, PIGX is a Python/R based workflow to analyse RNAseq data and admittedly a driving force behind me wanting that is that has a scRNAseq sibling, which would then the next target.
There are two remaining problems with the tests that I describe in https://salsa.debian.org/med-team/pigx-rnaseq/-/blob/master/debian/TODO. a) snakemake complains about what I reproduce on the command line b) a missing path to "html_dependency" - this comes from r-cran-rmarkdown or r-cran-dt, I guess. I guess, but I don't actually see it. Better ideas or even patches are welcome. Best, Steffen
