Greetings, [email protected], on 2020-06-15 14:48:07 +0300: > On 2020-06-12 20:40, Steffen Möller wrote: > > I found this > > > > Bio.PDB.mmtf docstring test ... skipped, missing Python dependency > > Bio.PDB.mmtf.DefaultParser docstring test ... skipped, missing Python > > dependency > > Bio.PDB.mmtf.mmtfio docstring test ... skipped, missing Python dependency > > > > to suggest packaging https://github.com/rcsb/mmtf-python - sigh. Any > > takers? Would be quite a fit for next week's hackathon, I presume. > > FYI, mmtf-python was accepted to unstable today.
Now that python3-mmtf is available for the testsuite, I had the
occasion to witness the PhyML error too on Intel platform while
working on #962944. Will see if I can do something about it.
As a side note, I remarked that t_coffee dislikes it when its
PID is greater than 260000:
$ t_coffee -version
PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 -
Revision 5d5a1c1 - Build 465)
--ERROR: MAX_N_PID exceded -- Recompile changing the value of MAX_N_PID
(current: 260000 Requested: 371481)
The version check loops in memory allocation, filling memory
until I SIGUSR1 it away, or the kernel unleashes the OOM reaper.
It looks like a bug if Debian 11 needs to be able to run
smoothly while allowing PIDs greater than 32768.
Have a nice day, :)
--
Étienne Mollier <[email protected]>
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