Hello, I had a look at the MCL package and found that it is very much focused on the MCL library but apparently does not feature the impala library that ships the implementation of mclgUnionv. Proof below, I compiled MCL myself and copied libimpala.a to the ocaml directory.
I am mostly clueless about ocaml. Does this help anyone to fix the problem or have a chat with the Debian maintainer of the mcl package? Uh - that's us. :o/ Steffen moeller@steffen-laptop-debian:~/git/med-team/pplacer/_build$ ocamlfind ocamlopt -ccopt -static -linkpkg -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -packag e mcl -thread -cclib -lpthread -cclib -lpplacercside -cclib -Lpplacer_src -cclib -lcdd -cclib -Lcdd_src -cclib -lpplacer_pam -cclib -Lpam_src -cclib -lgsl -I cdd_src -I common_src -I json_src -I pplac er_src -I pam_src cdd_src/cdd.cmx common_src/ppr.cmx common_src/mapsSets.cmx common_src/number.cmx common_src/algMap.cmx common_src/ppatteries.cmx common_src/linear_utils.cmx json_src/jsontype.cmx jso n_src/jsonparse.cmx json_src/jsonlex.cmx json_src/json.cmx pplacer_src/simple_json.cmx pplacer_src/refpkg_parse.cmx pplacer_src/fasta.cmx pplacer_src/nuc_models.cmx pplacer_src/prot_models.cmx pplacer _src/stockholm.cmx common_src/alignment.cmx common_src/batchfile.cmx common_src/delayed.cmx common_src/file_parsing.cmx common_src/power_iteration.cmx common_src/sql.cmx common_src/subcommand.cmx comm on_src/uptri.cmx common_src/version.cmx pplacer_src/myxml.cmx pplacer_src/newick_bark.cmx pplacer_src/bark_map.cmx pplacer_src/stree.cmx pplacer_src/gtree.cmx pplacer_src/edge_rdist.cmx pplacer_src/ne wick_parse_state.cmx pplacer_src/newick_parser.cmx pplacer_src/newick_lexer.cmx pplacer_src/tax_id.cmx pplacer_src/placement.cmx pplacer_src/pquery.cmx pplacer_src/pquery_io.cmx pplacer_src/newick_gtr ee.cmx pplacer_src/placerun.cmx pplacer_src/mass_map.cmx pplacer_src/matrix.cmx pam_src/pam_solver.cmx pplacer_src/kr_distance.cmx pplacer_src/barycenter.cmx pplacer_src/decor.cmx pplacer_src/decor_ba rk.cmx pplacer_src/decor_gtree.cmx pplacer_src/tensor.cmx pplacer_src/linear.cmx pplacer_src/diagd.cmx pplacer_src/gamma.cmx pplacer_src/glvm.cmx pplacer_src/glv_arr.cmx pplacer_src/glv_edge.cmx pplac er_src/gstar_support.cmx pplacer_src/like_stree.cmx pplacer_src/gcat_model.cmx pplacer_src/prefs.cmx pplacer_src/parse_stats.cmx pplacer_src/gmix_model.cmx pplacer_src/tax_classify.cmx pplacer_src/tax _seqinfo.cmx pplacer_src/tax_taxonomy.cmx pplacer_src/tax_map.cmx pplacer_src/refpkg.cmx pplacer_src/convex.cmx pplacer_src/edge_painting.cmx pplacer_src/classif_map.cmx pplacer_src/bayes_factor.cmx p placer_src/biom.cmx pplacer_src/bootstrap.cmx pplacer_src/check.cmx pplacer_src/fig.cmx pplacer_src/integration.cmx pplacer_src/minimization.cmx pplacer_src/three_tax.cmx pplacer_src/core.cmx pplacer_ src/edpl.cmx pplacer_src/string_matrix.cmx pplacer_src/fantasy.cmx pplacer_src/gaussian_approx.cmx pplacer_src/tax_mass.cmx pplacer_src/mokaphy_common.cmx pplacer_src/phyloxml.cmx pplacer_src/placerun _io.cmx pplacer_src/visualization.cmx pplacer_src/voronoi.cmx pplacer_src/guppy_cmdobjs.cmx pplacer_src/guppy_adcl.cmx pplacer_src/guppy_bary.cmx pplacer_src/guppy_check.cmx pplacer_src/guppy_to_rdp.c mx pplacer_src/seq_post.cmx pplacer_src/map_seq.cmx pplacer_src/multiprocessing.cmx pplacer_src/nbc.cmx pplacer_src/seq_group.cmx pplacer_src/pplacer_run.cmx pplacer_src/guppy_classify.cmx pplacer_src /mass_overlap.cmx pplacer_src/guppy_mcl.cmx pplacer_src/mass_compress.cmx pplacer_src/mass_islands.cmx pplacer_src/guppy_compress.cmx pplacer_src/guppy_demulti.cmx pplacer_src/guppy_distmat.cmx pplace r_src/guppy_edpl.cmx pplacer_src/guppy_splitify.cmx pplacer_src/guppy_pca.cmx pplacer_src/pca.cmx pplacer_src/som.cmx pplacer_src/guppy_epca.cmx pplacer_src/guppy_error.cmx pplacer_src/tax_gtree.cmx p placer_src/guppy_fat.cmx pplacer_src/guppy_filter.cmx pplacer_src/guppy_fpd.cmx pplacer_src/guppy_heat.cmx pplacer_src/indep_contrasts.cmx pplacer_src/guppy_indep_c.cmx pplacer_src/guppy_info.cmx ppla cer_src/guppy_islands.cmx pplacer_src/r_plots.cmx pplacer_src/guppy_kr.cmx pplacer_src/guppy_kr_heat.cmx pplacer_src/lpca.cmx pplacer_src/guppy_lpca.cmx pplacer_src/guppy_merge.cmx pplacer_src/guppy_m ft.cmx pplacer_src/guppy_ograph.cmx pplacer_src/guppy_placemat.cmx pplacer_src/guppy_pmlpca.cmx pplacer_src/rarefaction.cmx pplacer_src/guppy_rarefact.cmx pplacer_src/guppy_rarefy.cmx pplacer_src/gupp y_redup.cmx pplacer_src/guppy_round.cmx pplacer_src/guppy_sing.cmx pplacer_src/squashfunc.cmx pplacer_src/guppy_squash.cmx pplacer_src/guppy_to_csv.cmx pplacer_src/guppy_to_json.cmx pplacer_src/guppy_ tog.cmx pplacer_src/guppy_trim.cmx pplacer_src/guppy_unifrac.cmx pplacer_src/guppy_commands.cmx pplacer_src/guppy.cmx cdd_src/libcdd.a pam_src/libpplacer_pam.a pplacer_src/libpplacercside.a /usr/lib/o caml/libimpala.a -o pplacer_src/guppy.native && echo ok /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libsqlite3.a(sqlite3.o): in function `unixDlOpen': (.text+0x83c9): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /usr/bin/ld: /usr/lib/ocaml/libunix.a(initgroups.o): in function `unix_initgroups': (.text+0x1f): warning: Using 'initgroups' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /usr/bin/ld: /usr/lib/ocaml/libunix.a(getgr.o): in function `unix_getgrgid': (.text+0x16e): warning: Using 'getgrgid' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /usr/bin/ld: /usr/lib/ocaml/libunix.a(getgr.o): in function `unix_getgrnam': (.text+0x114): warning: Using 'getgrnam' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /usr/bin/ld: /usr/lib/ocaml/libunix.a(getpw.o): in function `unix_getpwnam': (.text+0x164): warning: Using 'getpwnam' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /usr/bin/ld: /usr/lib/ocaml/libunix.a(getpw.o): in function `unix_getpwuid': (.text+0x1be): warning: Using 'getpwuid' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /usr/bin/ld: /usr/lib/ocaml/libunix.a(getaddrinfo.o): in function `unix_getaddrinfo': (.text+0x1f9): warning: Using 'getaddrinfo' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /usr/bin/ld: /usr/lib/ocaml/libunix.a(gethost.o): in function `unix_gethostbyaddr': (.text+0x1bc): warning: Using 'gethostbyaddr_r' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /usr/bin/ld: /usr/lib/ocaml/libunix.a(gethost.o): in function `unix_gethostbyname': (.text+0x242): warning: Using 'gethostbyname_r' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /usr/bin/ld: /usr/lib/ocaml/libunix.a(getproto.o): in function `unix_getprotobynumber': (.text+0xe8): warning: Using 'getprotobynumber' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /usr/bin/ld: /usr/lib/ocaml/libunix.a(getproto.o): in function `unix_getprotobyname': (.text+0xc1): warning: Using 'getprotobyname' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /usr/bin/ld: /usr/lib/ocaml/libunix.a(getserv.o): in function `unix_getservbyname': (.text+0x109): warning: Using 'getservbyname' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /usr/bin/ld: /usr/lib/ocaml/libunix.a(getserv.o): in function `unix_getservbyport': (.text+0x159): warning: Using 'getservbyport' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking ok
