> I intended to upgrade the packaging for pftools[1] in Git but was running into
> ...
> /src/C/../../src/C/include/profile.h:70: multiple definition of
> `VectorPosition';
> pfsearchV3-pfsearch.o:./src/C/../../src/C/include/profile.h:70: first defined
> here
The code has mistakenly applied the usual pattern for a struct typedef
("typedef struct foo { ... } foo;") to an enum. Fixed by
+++ b/src/C/include/profile.h
INSERTION_TRANSITIONS_SIZE = 16
-} VectorPosition ;
+};
////////////////////////////// FOR SSE4.1 to WORK
//////////////////////////////////////////////
See also
https://github.com/sib-swiss/pftools3/blob/master/src/C/include/pfProfile.h#L151-L170
in which this change has already been made in this (somewhat diverged)
upstream.
John
