Hi Martin, First off, thanks for all your work on last-align upstream! :-) See below:
On Tue, 22 Dec 2020 at 13:46, Frith, Martin <[email protected]> wrote: > Many thanks for this detailed problem report. > > I believe that's an unintended (and surprising) problem, it should still > work. The trouble is, it works on all my computers (I don't have a 32-bit > arch). So it's hard for me to figure out. > You can maybe create an i386 chroot in an amd64 system, and test stuff there - this is how I'm testing it as well. > > If you replace your command with: > $lastal -vvv humdb fuguMito.fa > (verbose mode), what does it print before hanging? > $lastal -vvv humdb fuguMito.fa /usr/lib/last-align/lastal-plain: batch size=8192 /usr/lib/last-align/lastal-plain: calculating matrix probabilities... /usr/lib/last-align/lastal-plain: matrix lambda=1.09861 /usr/lib/last-align/lastal-plain: matrix letter frequencies (upper=reference, lower=query): A C G T 25 25 25 25 25 25 25 25 /usr/lib/last-align/lastal-plain: getting E-value parameters... 1.0960171987681839, 0.33538787507026158, 2.0290734315292083, -0.46514786408422282, 2.0290734315292083, -0.46514786408422282, 5.0543294182155085, 15.130999712620039, 5.0543294182155085, 15.130999712620039, 5.0543962679167036, 15.129930117400917 Hangs after this bit. > > It would be great if you could test versions between 1145 and 1167 (e.g. > by "hg update -r1155"). Of course I can't expect you to go to that trouble. > I tried it for version 1155, and it times out with the exact same log I pasted above for 1167. Which means something broke between 1145 -1155. Admittedly, I did not inspect any further. Please let me know if you'd need any more information. Thanks and regards Nilesh
