Le mer. 27 janv. 2021 à 21:47, Andreas Tille <[email protected]> a écrit :
> Hi, > > I've tried to upgrade picard-tools in Git. Unfortunately (and > admittedly not unexpected) the build time tests are failing: > Not failing would indeed have been a surprise.... ;-) Will have a look on this tomorrow. Is git repo up to date ? Olivier > ... > Running Test: Test method > testForVcf(picard.vcf.processor.WidthLimitingDecoratorTest) > Gradle Test Executor 1 finished executing tests. > Results: FAILURE (4972 tests, 4970 successes, 2 failures, 0 skipped) > > 4972 tests completed, 2 failed > Finished generating test XML results (0.188 secs) into: > /build/picard-tools-2.24.1+dfsg/build/test-results/test > Generating HTML test report... > Finished generating test html results (0.191 secs) into: > /build/picard-tools-2.24.1+dfsg/build/reports/tests/test > :test FAILED > :test (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 7 mins > 33.86 secs. > > FAILURE: Build failed with an exception. > > * What went wrong: > Execution failed for task ':test'. > > There were failing tests. See the report at: > file:///build/picard-tools-2.24.1+dfsg/build/reports/tests/test/index.html > > * Try: > Run with --debug option to get more log output. Run with --scan to get > full insights. > > * Exception is: > org.gradle.api.tasks.TaskExecutionException: Execution failed for task > ':test'. > at > org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:100) > at > org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:70) > at > org.gradle.api.internal.tasks.execution.OutputDirectoryCreatingTaskExecuter.execute(OutputDirectoryCreatingTaskExecuter.java:51) > at > org.gradle.api.internal.tasks.execution.SkipUpToDateTaskExecuter.execute(SkipUpToDateTaskExecuter.java:62) > at > org.gradle.api.internal.tasks.execution.ResolveTaskOutputCachingStateExecuter.execute(ResolveTaskOutputCachingStateExecuter.java:54) > at > org.gradle.api.internal.tasks.execution.ValidatingTaskExecuter.execute(ValidatingTaskExecuter.java:60) > at > org.gradle.api.internal.tasks.execution.SkipEmptySourceFilesTaskExecuter.execute(SkipEmptySourceFilesTaskExecuter.java:97) > at > org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter.execute(CleanupStaleOutputsExecuter.java:87) > at > org.gradle.api.internal.tasks.execution.ResolveTaskArtifactStateTaskExecuter.execute(ResolveTaskArtifactStateTaskExecuter.java:52) > at > org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:52) > at > org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:54) > at > org.gradle.api.internal.tasks.execution.ExecuteAtMostOnceTaskExecuter.execute(ExecuteAtMostOnceTaskExecuter.java:43) > at > org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:34) > at > org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker$1.run(DefaultTaskGraphExecuter.java:248) > at > org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336) > at > org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328) > at > org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199) > at > org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110) > at > org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:241) > at > org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:230) > at > org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.processTask(DefaultTaskPlanExecutor.java:123) > at > org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.access$200(DefaultTaskPlanExecutor.java:79) > at > org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:104) > at > org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:98) > at > org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.execute(DefaultTaskExecutionPlan.java:626) > at > org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.executeWithTask(DefaultTaskExecutionPlan.java:581) > at > org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.run(DefaultTaskPlanExecutor.java:98) > at > org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63) > at > org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46) > at > org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) > Caused by: org.gradle.api.GradleException: There were failing tests. See > the report at: > file:///build/picard-tools-2.24.1+dfsg/build/reports/tests/test/index.html > at > org.gradle.api.tasks.testing.AbstractTestTask.handleTestFailures(AbstractTestTask.java:547) > at > org.gradle.api.tasks.testing.AbstractTestTask.executeTests(AbstractTestTask.java:464) > at org.gradle.api.tasks.testing.Test.executeTests(Test.java:530) > at > java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native > Method) > at > java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) > at > java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at > org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:73) > at > org.gradle.api.internal.project.taskfactory.StandardTaskAction.doExecute(StandardTaskAction.java:46) > at > org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:39) > at > org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:26) > at > org.gradle.api.internal.AbstractTask$TaskActionWrapper.execute(AbstractTask.java:780) > at > org.gradle.api.internal.AbstractTask$TaskActionWrapper.execute(AbstractTask.java:747) > at > org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$1.run(ExecuteActionsTaskExecuter.java:121) > at > org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336) > at > org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328) > at > org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199) > at > org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110) > at > org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeAction(ExecuteActionsTaskExecuter.java:110) > at > org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:92) > ... 29 more > > > * Get more help at https://help.gradle.org > > BUILD FAILED in 7m 44s > 5 actionable tasks: 3 executed, 2 up-to-date > > > Any hint / commit how to fix this is welcome. > > Kind regards > > Andreas. > > > -- > http://fam-tille.de >
