Hi Jim,
Le 07/02/2021 à 16:01, James Procter (Staff) a écrit :
Hi Nilesh/Pierre
It looks like the malloc-fail is due to jalview trying to grab as much
memory as possible on start up. That might need to be controlled for
testing, since the tests need at most 512MB. @Pierre - should be simply
a case of adding -
-jvmmemmax=512M
for all test runs in
https://salsa.debian.org/java-team/jalview/-/blob/master/debian/tests/someCommandLineInvocations
<https://salsa.debian.org/java-team/jalview/-/blob/master/debian/tests/someCommandLineInvocations>
Thanks for your comments, I was also going to use -jvmmemmax in the
tests. Yet, do you think it will be okay if someone with an i386
computer tries to launch Jalview (I have in mind the main Jalview
application, not my tests)?
Would it be reasonable to apply a default percentage for the maximum
heap size of, say, 50 pct instead of 90?
The errors about no X11 display being set are non-fatal and look like
our problem upstream (well, Ben's perhaps 🙂 ) rather than Pierre's.
Yeah, no problem about this :)
Jim.
Thanks a lot,
Pierre
------------------------------------------------------------------------
*From:* Pierre Gruet <[email protected]>
*Sent:* 07 February 2021 14:45
*To:* Debian Med Project List <[email protected]>
*Subject:* Re: [RFS] jalview
Hi Nilesh,
Le 07/02/2021 à 15:30, Nilesh Patra a écrit :
Hi Pierre,
Thanks for your work on jalview. However, it seems that the autopkgtest
fails on i386, which will prevent migration to testing.
It looks like a memalloc problem so maybe this can be simply skipped. Or
if I'm mistaken, please consider fixing this and uploading.
Yes, thanks for checking! Indeed the memory allocation appears to be
problematic on i386. But I found some ways to fix it in a sensible way
-- I am performing some checks and uploading then.
PS: Please upload with urgency:high so it hits bullseye
Seems relevant. Although the autopkgtest will reduce the delay to 2 days
in any case.
[1]:
https://ci.debian.net/data/autopkgtest/testing/i386/j/jalview/10322903/log.gz
<https://ci.debian.net/data/autopkgtest/testing/i386/j/jalview/10322903/log.gz>
<https://ci.debian.net/data/autopkgtest/testing/i386/j/jalview/10322903/log.gz
<https://ci.debian.net/data/autopkgtest/testing/i386/j/jalview/10322903/log.gz>>
Nilesh
Bye,
Pierre
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