Hello Nilesh!

Thank you for noticing this.

Please add entries to debian/changelog in the future. I use `dch 'changed a
thing'` followed by `debcommit -a` instead of using `git commit`, to ensure
I document my changes.

In your patch you removed `-O3`, I've put that back to simplify the patch.
It doesn't hurt to specify that twice.

I've pushed my cleanups. Can you also add logic to compile rna-star
multiple times using -mavx2 on down for amd64 along with a wrapper script?

https://salsa.debian.org/med-team/mmseqs2/-/blob/32b4e057b5d0e205f32b0b5184433ac155405198/debian/rules#L20
is a good example (along with
https://salsa.debian.org/med-team/mmseqs2/-/blob/32b4e057b5d0e205f32b0b5184433ac155405198/debian/bin/simd-dispatch
)

On Fri, 26 Feb 2021 at 13:44, Nilesh Patra <[email protected]> wrote:

> Hi Michael and other folks,
>
> The version 2.7.8a of rna-star which Steffen uploaded a couple of days ago
> seems to use intel intrinsics which leads unfortunately builds on non-amd64
> Since simde is a good way to mitigate this, I tried using this -- on
> testing on a arm64 porter box, build goes green and autopkgtests (I
> manually an them) look good as well.
>
> Can I please get a review of my changes?
>
> Also, I'm not sure if it'd be good to be uploaded during the soft freeze,
> and need suggestions here. Note that it also uses a "Built-Using" on simde
> due to it's license being GPL3+
>
> Nilesh
>
>

-- 
Michael R. Crusoe
Co-founder & Lead,
Common Workflow Language project <http://www.commonwl.org/>
https://orcid.org/0000-0002-2961-9670
[email protected]

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