Your message dated Thu, 04 Mar 2021 13:18:23 +0000
with message-id <[email protected]>
and subject line Bug#984477: fixed in libbio-variation-perl 1.7.5-2
has caused the Debian Bug report #984477,
regarding libbio-variation-perl: missing Breaks+Replaces: bioperl (<< 1.7.3)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
984477: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=984477
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: libbio-variation-perl
Version: 1.7.5-1
Severity: serious
User: [email protected]
Usertags: piuparts
Hi,
during a test with piuparts I noticed your package fails to upgrade from
'buster'.
It installed fine in 'buster', then the upgrade to 'bullseye' fails
because it tries to overwrite other packages files without declaring a
Breaks+Replaces relation.
See policy 7.6 at
https://www.debian.org/doc/debian-policy/ch-relationships.html#overwriting-files-and-replacing-packages-replaces
>From the attached log (scroll to the bottom...):
Selecting previously unselected package libbio-variation-perl.
Preparing to unpack .../048-libbio-variation-perl_1.7.5-1_all.deb ...
Unpacking libbio-variation-perl (1.7.5-1) ...
dpkg: error processing archive
/tmp/apt-dpkg-install-eyjeT8/048-libbio-variation-perl_1.7.5-1_all.deb
(--unpack):
trying to overwrite '/usr/bin/bp_flanks', which is also in package bioperl
1.7.2-3
dpkg-deb: error: paste subprocess was killed by signal (Broken pipe)
IIRC bioperl 1.7.3 is the version that got split up into several packages,
therefore the existing
Breaks+Replaces: libbio-perl-perl (<= 1.7.2)
are also insufficiently versioned (should be (<< 1.7.3) as well).
cheers,
Andreas
bioperl-run_1.7.3-6.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: libbio-variation-perl
Source-Version: 1.7.5-2
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
libbio-variation-perl, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated libbio-variation-perl
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 04 Mar 2021 13:55:37 +0100
Source: libbio-variation-perl
Architecture: source
Version: 1.7.5-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 984477
Changes:
libbio-variation-perl (1.7.5-2) unstable; urgency=medium
.
* Team upload.
* Fix maintainer address
* Add debian/salsa-ci.yml
* Breaks+Replaces: bioperl (<< 1.7.3)
Closes: #984477
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