Am 30.03.21 um 15:25 schrieb Andreas Tille: > Hi Pierre, > > On Tue, Mar 30, 2021 at 01:16:17PM +0200, Pierre Gruet wrote: >> Yes! It is almost ready and I'm happy about this :) > That's understandable considering the lot of work.
Thank you for this. Well done, indeed. >> While we are at it: I had to package SnpEff separately from its companion >> SnpSift, as their source trees are now completely separated. >> Do you (or someone else) know if SnpSift would be important to package? >> Looking at the spreadsheet I am not sure it is worth packaging right now. > I have seen it mentioned from time to time but I'm not sure whether it > was just in connection with SnpEff. Tony and Steffen (both in CC) might > give some more informed answer to your question. The bcbio devs answered this here https://github.com/bcbio/bcbio-nextgen/issues/1832 where they look forward to exclusively use vcfanno to filter the variants. Maybe a pointer to https://tracker.debian.org/pkg/vcfanno should be added as a suggestion to snpeff? Many thanks again! Steffen (who should now have another look at bcbio again)
