Hi John, Am 25.05.21 um 15:17 schrieb John Marshall: > Steffen Möller wrote: >> htscodecs is now distributed next to samtools > [...] >> I needed this update to compile 1.12 of htslib. which again is required >> to compile bcftools 1.12. > If you are making htslib depend on your libhtscodecs package then you need to > configure htslib to use it via --with-external-htscodecs. > > At present, you are configuring htslib to use its bundled copy from the > htslib/htscodecs subdirectory (which you have copied into your repository > rather than having it as a git submodule as the upstream htslib has). I would > suggest that you delete the bundled htscodecs subdirectory/submodule entirely > from your repository (thus forcing your build to use an external > libhtscodecs), as you do for samtools's and bcftools's bundled (in release > tarballs) copy of htslib.
Thank you tons. I will add that flag and remote that folder just as you suggested - if Michael as the official Uploader does not object. On a sidenote, I did not voluntarilty update that libhtscodecs package but got an error during the build tests of the htslib package that referred to codecs -. and that was gone after that update. Best, Steffen
