Andreas Tille <andr...@an3as.eu> writes: > -- Could NOT find JNI (missing: JAVA_AWT_LIBRARY JAVA_AWT_INCLUDE_PATH). > > (which is probably caused at the end of file > ngs/ncbi/ngs-jni/CMakeLists.txt )
More likely the find_package(Java ...) call on line 159 of build/env.cmake. At any rate, it looks like CMake might want the full (non-headless) JDK; I don't see an obvious way around that requirement short of setting the relevant variables explicitly, so I'd suggest keeping it simple and upgrading the build dependency. > test/sharq/CMakeLists.txt:44 (ExternalProject_Add) > > -- Configuring incomplete, errors occurred! > > It seems the patch I tried[1] is not working as intended. :-( Please try patching test/sharq in addition to tools/sharq. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu