Steffen Moeller <[email protected]> writes: > Thank you both for your help.
No problem. > Am 02.08.2022 um 10:48 schrieb Andreas Tille: [...] >> Do you have any other hint how to create the main binaries reliably? Ah, sorry, a closer look indicates that the build system needs additional hints to find system VDB: --with-vdb=/usr VDB_INCLUDE=-I/usr/include/ncbi-vdb > I wanted to see it compile and thus withouted as much as possible in a > first run to reduce the complexity. That's fair. FWIW, most of these options have no bearing on the package anyway and are just artifacts of IgBLAST's origin in a larger tree. Also, there's one option I'd suggest actively enabling: --with-openmp. If you specify neither --with-openmp nor --without-openmp, the build system uses OpenMP on a limited basis, but explicit --with-openmp enables it across the board, from which (Ig)BLAST generally benefits. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/[email protected]
